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Report for CCDS23647.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23647.2 Reviewed, update pending Mus musculus 9 Tcaim 23 108 98 CCDS HistoryNCBI Gene:382117Re-query CCDS DB by CCDS ID:23647.2See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 23647.2
The coding region has been updated to extend the N-terminus. The use of an alternative upstream downstream start codon, which appears to be rodent-specific, would result in a protein that is 10 aa longer at the N-terminal.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 23647.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052740.13 ENSMUSP00000049759.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052740.13Link to Ensembl Protein Viewer:ENSMUSP00000049759.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052740Re-query CCDS DB by Protein ID:ENSMUSP00000049759
Original member NCBI NM_001013405.2 NP_001013423.2 Updated not alive Link to Nucleotide Sequence:NM_001013405.2Link to Protein Sequence:NP_001013423.2Re-query CCDS DB by Nucleotide ID:NM_001013405Re-query CCDS DB by Protein ID:NP_001013423
Current member NCBI NM_001013405.3 NP_001013423.3 Pending alive Link to Nucleotide Sequence:NM_001013405.3Link to Protein Sequence:NP_001013423.3Re-query CCDS DB by Nucleotide ID:NM_001013405Re-query CCDS DB by Protein ID:NP_001013423Link to BLAST:NP_001013423.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013423.3 499 Q66JZ4 499 100% 0 0

Chromosomal Locations for CCDS 23647.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122808778 122808836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122811758 122811893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122814432 122814588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122818774 122819026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122824463 122824585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122826193 122826290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122826847 122826938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122831620 122831858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122833526 122833657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 122834736 122834976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGCTTGGAAGTTGGCGTGCTTATTCGGAAATGTTTTGCCACTTGAGGCCTTTGAGGAGGTTCGGCCTGA
GGAAGGTCCTCCCTCATTGGCTTCACTACTCTCGAGCTTTATCAGGGGCAGAAGCCATCAACGCCTTGAG
GCCTTTCTACTTTGCAGTGCATCCTGATTTCTTTGGACAGCACCCCAGGGAAAGGGAAGTCAATGAAAAT
TCTCTTAAGAGATTAAGTGTCTATTTAGAAAATCTCCAGAAACCAGGCTTCAAATCTCTGAAACCAACTC
AGCTTACATTTTATATAAGAGAAAAAACAGCCCAGAATTCCTCTGAAGGCCAGGAGCCTATCAGTACTAC
CGGATTCCGAGCAGTCAGATTTACTTTGCACAGCAGCGATCTGCTAAGCACAGTATTGTATATTCTCAAC
TCCTGCAGTTTGCCTGTTGAACACGTCCAAAGCTTGAACACTAATGTGCATTCCCAGCCTCTCAAGGAAG
CTACAGGGATGCCTGACAGACCCATCAAATGGCATAGGTCCTATTATTCCTTTACTGGGTTCAAGGACCC
TGATGAAGACCTCACACACGTCTCAAGAGTGGAAACAACCCTAACGTCCTGGTTAGGTAGCAATGGGAAA
GGTGCCGTGAAGAAGCTGAGGAACAGTCTGCCACTTCGGAAGGAGCTGGATCGCCTGAAGAATGAGCTGT
CTGAGCTTCTGCAGCTTTCAGACATCAGGTGGCAGAGAGGCTGGGGAGTTGCCCATCGCTGCAGCCAGCT
GCACAGTCTCAGCCGCCTAGCACAGCAGAATCCGGGGCCACTTCAGAATGTGAAAGGATGCACGGTTGTA
TTCACAGACCGCTCCGGTATGAGTGCACTGGGCCATGTGATGCTGGGAACCATGGATGTCCACCACCACT
GGACAAGGCTTTTTGAAAGCTTGCCAAGTTATTTTGACCTTCAGAGGAGAATGTCAGCCTTAGAAGCCCA
AATAAGCAATCTTCTAGGGGGAATCCAAGTGGTTTATATCGAAGAGTTGCAGCCAGCACTCACACTTGAT
CAGTACTACTCTCTCCTCCACACCTTCTACAACCAGCTGCTGAGAAGCAGGGTGCCGCCCCACCCCCACC
CCCAGAGTCTGAGCGGCTTGCAGATGATCCTTAGCAGTGACAGGTATGCGCCAAGCTTGCATGAACTCGG
GCATTTTGATATCCCAGCCCTCTCAGATCCAGCAAGCCTGCAGTCCTTCATGAGAACCAAAGCCCAGCAG
GCGAGAGAAAACATGACTAGAAGGGAGAAGTTAAAAGTTATGGAAAATGAATTGATACAGGCTTCAACAA
AGCAGTTTTCTCTGGAGAAGTTGTATAAAGAGCCCAGCATTTCTAGCAGACAGATGGTGGATTGCTGTAA
GAGACTTCTTGAACAGTCGCTGCCATATCTGCATGGGATGCACCTCTGCGTCTCACATTTCTATTCTGTT
ATGCAAGATGGAGACCTGTGCATCCCGTGGAACTGGAAGAAAGGAGAAGCCATGAAGTAA

Translation (509 aa):
MLGSWRAYSEMFCHLRPLRRFGLRKVLPHWLHYSRALSGAEAINALRPFYFAVHPDFFGQHPREREVNEN
SLKRLSVYLENLQKPGFKSLKPTQLTFYIREKTAQNSSEGQEPISTTGFRAVRFTLHSSDLLSTVLYILN
SCSLPVEHVQSLNTNVHSQPLKEATGMPDRPIKWHRSYYSFTGFKDPDEDLTHVSRVETTLTSWLGSNGK
GAVKKLRNSLPLRKELDRLKNELSELLQLSDIRWQRGWGVAHRCSQLHSLSRLAQQNPGPLQNVKGCTVV
FTDRSGMSALGHVMLGTMDVHHHWTRLFESLPSYFDLQRRMSALEAQISNLLGGIQVVYIEELQPALTLD
QYYSLLHTFYNQLLRSRVPPHPHPQSLSGLQMILSSDRYAPSLHELGHFDIPALSDPASLQSFMRTKAQQ
ARENMTRREKLKVMENELIQASTKQFSLEKLYKEPSISSRQMVDCCKRLLEQSLPYLHGMHLCVSHFYSV
MQDGDLCIPWNWKKGEAMK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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