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Report for CCDS81234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81234.1 Public Mus musculus Y Sly 23 108 98 CCDS HistoryNCBI Gene:382301Re-query CCDS DB by CCDS ID:81234.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190292.1 ENSMUSP00000140340.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190292.1Link to Ensembl Protein Viewer:ENSMUSP00000140340.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190292Re-query CCDS DB by Protein ID:ENSMUSP00000140340
Original member Current member NCBI NM_201530.2 NP_963288.2 Accepted alive Link to Nucleotide Sequence:NM_201530.2Link to Protein Sequence:NP_963288.2Re-query CCDS DB by Nucleotide ID:NM_201530Re-query CCDS DB by Protein ID:NP_963288Link to BLAST:NP_963288.2

Chromosomal Locations for CCDS 81234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 57188631 57188748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57194077 57194143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57194791 57194825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57201822 57201888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57202465 57202499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57209672 57209789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57210551 57210650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57212680 57212778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 57213138 57213167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGAGAAGAATGGCTCTTAAGAAATTGAAGGTGATACCAAAGGAAGGTTACTTATTACTTTTGGACTTTG
ATGATGAGGACGATGACATAAAAGTTTCAGAGGAGGCTCTTTCGGAAGTAAAGAGCCCAGCATTTGATAA
AAATGAGAATATATCGCCTCAAGCAGAAGCAGATGAAGATATGGGAGATGAAGTAGACAGTATGTTGGAT
AAATCTGAAGTAAATAATCCAGCAATTGGTAAAGATGAAAATATATCGCCTCAAGTAAAAGGAGATGAAG
ACATGGGACATGAAGTAGGCAGTATGTTGGATAAATCTGGAGATGACATTTATAAGACGCTTCACATAAA
GAGAAAATGGATGGAAACTTATGTCAAAGAATCTTTCAAAGGCAGCAACCAGAAATTAGAAAGATTTTGC
AAAACGAACGAACGAGAGAGGAAGAACATCAACAACAAATTTTGTGAGCAGTATATAACTACATTTCAGA
AGTCTGATATGGATGTACAGAAATTCAATGAAGAAAAAGAAAAATCAGTGAATAGTTGTCAAAAAGAACA
ACAAGCATTGAAACTGTCCAAATGTAGTCAGAACCAGACCCTGGAAGCAGTTAAAGAAATGCATGAGAAG
TCCATGGAGGTTTTGATGAACTTGGGGACCAAGAACTAA

Translation (222 aa):
MRRMALKKLKVIPKEGYLLLLDFDDEDDDIKVSEEALSEVKSPAFDKNENISPQAEADEDMGDEVDSMLD
KSEVNNPAIGKDENISPQVKGDEDMGHEVGSMLDKSGDDIYKTLHIKRKWMETYVKESFKGSNQKLERFC
KTNERERKNINNKFCEQYITTFQKSDMDVQKFNEEKEKSVNSCQKEQQALKLSKCSQNQTLEAVKEMHEK
SMEVLMNLGTKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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