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Report for CCDS24188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24188.1 Public Mus musculus 10 Best3 23 108 98 CCDS HistoryNCBI Gene:382427Re-query CCDS DB by CCDS ID:24188.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020378.4 ENSMUSP00000020378.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020378.4Link to Ensembl Protein Viewer:ENSMUSP00000020378.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020378Re-query CCDS DB by Protein ID:ENSMUSP00000020378
Original member Current member NCBI NM_001007583.1 NP_001007584.1 Accepted alive Link to Nucleotide Sequence:NM_001007583.1Link to Protein Sequence:NP_001007584.1Re-query CCDS DB by Nucleotide ID:NM_001007583Re-query CCDS DB by Protein ID:NP_001007584Link to BLAST:NP_001007584.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007584.1 669 Q6H1V1-1 669 100% 0 0

Chromosomal Locations for CCDS 24188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116988631 116988782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116992508 116992602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116993064 116993297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117002520 117002674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117003885 117003962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117004381 117004533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117007588 117007668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117008890 117009041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117023937 117024846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGACTGTCACTTACTCCAGTAAAGTAGCAAATGCAACATTTTTTGGATTTCATAGGTTGCTTCTCAAGT
GGAGAGGTAGTATCTACAAGCTGCTGTACAGGGAATTTATTGTTTTTGCTGTTCTTTACACAGCAATCAG
TCTGGTGTACAGATTGTTACTTACAGGAGCCCAAAAACGTTACTTTGAAAAATTATCAATTTACTGTGAC
AGATATGCTGAACAAATTCCAGTAACCTTTGTGCTTGGGTTTTACGTCACTCTGGTAGTGAACCGATGGT
GGAACCAGTTTGTGAATCTGCCTTGGCCAGACAGGCTGATGCTCCTCATTTCCAGCAGTGTCCACGGGAG
CGACCAGCATGGGCGCCTGCTCAGAAGGACGCTGATGCGCTACGTCAACCTGACGTCCCTGCTCATCTTC
CGCTCGGTGAGCACCGCGGTGTACAAGAGGTTTCCCACCATGGACCACGTGGTCGAAGCAGGTTTTATGA
CGGCAGATGAGAGGAAATTATTCGACCACCTCAAATCGCCTCATCTGAAGTACTGGGTTCCCTTCATTTG
GTTTGGAAATCTTGCAACCAAAGCCCGGAATGAAGGCAGAATCAGAGACAGCGTTGATCTACAATCACTG
ATGACTGAAATGAATCGGTACCGCTCTTGGTGCAGCCTCTTATTTGGTTACGACTGGGTTGGCATTCCGC
TGGTTTACACACAGGTCGTCACCCTCGCCGTCTACACGTTCTTCTTTGCGTGCCTGATCGGAAGGCAGTT
CCTGGATCCCACCAAAGGCTACGTAGGACATGACTTGGATCTGTACGTTCCCATCTTCACTCTCCTCCAG
TTCTTCTTCTACGCAGGATGGCTCAAGGTTGCAGAGCAGCTGATCAACCCTTTCGGGGAAGATGACGATG
ACTTTGAAACAAACTGGTGCATTGACAGAAACCTGCAGGTCTCTCTCTTGGCTGTGGATGAAATGCATAT
GAGTTTGCCCAAGATGAAGAAGGACATTTACTGGGACGATTCTGCTGCCCGGCCACCGTACACACTGGCG
GCTGCCGACTACTGCATACCGTCCTTTCTGGGCTCAACGATCCAAATGGGGCTGTCCGGGTCCAACTTCC
CCGCAGAGGACTGGCTGTGGAACTACGAGAAACACGGAAACCGGCACTCAGTGATGAGGAGGGTCAAGCG
CTTCCTGAGTACCCACGAGCATCCTGGCAGCCCCAGGAGGAGGAGGAGCTTCGGCAGGCAGGCCAGCGAC
AGCTCCATGTTCTTACCCCCAAGCCCAGCTCGGGATCTGCTGGATGTGCCGTCCAGGAACCCCCACCGAG
GCTCGCCCACACGGAAGCAATCCCGCTCCCAAGAGGGCAGCCCCAAGCTGCACTCCAGCATGGGAGAACT
GTCCACCATCAGGGAGACCAGCCGTACCAGCACGCTGCAGAGCCTGAGCCCGCAGTCCAGCGTGAGGTCC
TCCCCTACCAAAATGCCCCAGGTCCCTGAGGTCCTAATCACCGCCGCTGAAGCACCAGCGTTCTCAGCAG
ACAGCCATCAGCATGACTCCACTACCTCCATCTTGAGCCTCGAGTTCACCGGGGTGCAGCCGAGCGGGAC
TGAGCAGCAGGTAGAGCCTTCAGGGACCCCACCTGGAGACCCCAATCCCCAGACTACTTCAGCCAGTACT
GAAAGAGACTTGTTCAAGTTCGAGGAAGATCTAGAGGATGACAGATTTCCCAAAAGGTGGAGCCTGCCAG
AGTTTCTGGAGTCCAGGCACACCTCGCTGGGAAACTTAGGTCCAGATCCTGTGAGTCCCCGGGATGCTCT
TCTTTTACCTGACACAGAAACACCCTCAGAGACCAACGGAATCCATCCTGGGGCTGGCTCTGCCCTCGCC
CCCGACATCCTGTACTTAATGGAAAGTTTGGATAAGGAAACAGACATCTTGGAGTTTAACAACGAGCACA
CTGGAGAATCCCCGAAGGGAACACCACAGCGCCCCAGGACCTGGTTCTAA

Translation (669 aa):
MTVTYSSKVANATFFGFHRLLLKWRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGAQKRYFEKLSIYCD
RYAEQIPVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMLLISSSVHGSDQHGRLLRRTLMRYVNLTSLLIF
RSVSTAVYKRFPTMDHVVEAGFMTADERKLFDHLKSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSL
MTEMNRYRSWCSLLFGYDWVGIPLVYTQVVTLAVYTFFFACLIGRQFLDPTKGYVGHDLDLYVPIFTLLQ
FFFYAGWLKVAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMSLPKMKKDIYWDDSAARPPYTLA
AADYCIPSFLGSTIQMGLSGSNFPAEDWLWNYEKHGNRHSVMRRVKRFLSTHEHPGSPRRRRSFGRQASD
SSMFLPPSPARDLLDVPSRNPHRGSPTRKQSRSQEGSPKLHSSMGELSTIRETSRTSTLQSLSPQSSVRS
SPTKMPQVPEVLITAAEAPAFSADSHQHDSTTSILSLEFTGVQPSGTEQQVEPSGTPPGDPNPQTTSAST
ERDLFKFEEDLEDDRFPKRWSLPEFLESRHTSLGNLGPDPVSPRDALLLPDTETPSETNGIHPGAGSALA
PDILYLMESLDKETDILEFNNEHTGESPKGTPQRPRTWF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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