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Report for CCDS2414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2414.1 Public Homo sapiens 2 CATIP 24 110 108 CCDS HistoryNCBI Gene:375307Re-query CCDS DB by CCDS ID:2414.1Re-query CCDS DB by GeneID:375307See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2414.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289388.4 ENSP00000289388.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000289388.4Link to Ensembl Protein Viewer:ENSP00000289388.3Re-query CCDS DB by Nucleotide ID:ENST00000289388Re-query CCDS DB by Protein ID:ENSP00000289388
Original member Current member NCBI NM_198559.2 NP_940961.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198559.2Link to Protein Sequence:NP_940961.1Re-query CCDS DB by Nucleotide ID:NM_198559Re-query CCDS DB by Protein ID:NP_940961Link to BLAST:NP_940961.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940961.1 387 Q7Z7H3 387 100% 0 0

Chromosomal Locations for CCDS 2414.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218356885 218356909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218357095 218357187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218357534 218357734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218358037 218358092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218360573 218360659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218362735 218362902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218364628 218364752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218367024 218367100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218367430 218367518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218367722 218367964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGTCCTCCAAGGTTTACTCCACAGGCTCCAGAGCTAAGGACCACCAGCCCTCGGGTCCGGAGTGTCTGC
CACTCCCAGAGGCCAATGCTGAAGCCATCGACTTCCTCAGCTCCCTCCACAAGGAGGAGCTACAGATGCT
GTTCTTCTCTGAGACGCTGGCCATGGTCTCAGACACCGGGGAGCCTCAGGGAGAGCTGACCATTGAGGTG
CAGAGAGGGAAATACCAGGAAAAACTCGGCATGCTGACATACTGCCTCTTCGTGCATGCCTCTAGCCGAG
GCTTCTTGGACAAAATGCTCTGCGGAAATTCCCTCCTGGGCTATCTCTCAGAGAAGCTGGAGCTCATGGA
ACAGCACAGCCAAGACTTCATCAAGTTCCTCATCCTCCCCATGGAACGGAAGATGAGTTTGCTGAAGCAG
GATGATCAGCTGGCTGTGACCAGAAGTATCAAGGAGGGTGAGGAAGTGAAGACTGGAGTGACTTCTTTCC
CCTGGAGCTCAATCAAGGGCTTCATCTCAGAGGCTGCCAACCTGGTGCTGCTCAGGGTGATGGCCTGGCG
GCGGATGGTGCCCAGCAATGCCCGCTTCCTGACCTTGGACACCGAGGGCAAACTCTGCTATTTGACCTAT
CAAAACCTGGGCTTCCAGACCATCCAGGTAGACCATCAGCAGGCTGAAGTCTTCATCGTGGAGCAGACTG
TCCACGCGGAGGAGGGCATCCCCATGTCCTGCCAGTACTACCTGCTCTCCGATGGGCACCTGGCCAAGAG
AATACAGGTGGGCTCCCCAGGGTGCTGCATCATCACCAAGATGCCCATCTTGAGGGAAGAGGATGAGATT
GAGCCACGCCCAGTGTTTGAGAAGAAGCCCCTGGTATGGGAGGAGGATATGGAGCTCTATTCGAAGTTCC
TGGACCGGAAGGAGGAGCTCCGGCTCGGCCACGCCAGCTATCTGCGGCAGCACCCCGAAGCCCACGCGCT
CATCTCCGACTTCCTGCTCTTCCTGCTGCTGCGCCAGCCGGAGGACGTGGTCACCTTCGCCGCCGAGTTC
TTCGGCCCCTTCGACCCGTGGCGTCCGTCGTCACCGGCCTTGGGCTCCTCCCACCGGCCCAACCCTTTCC
GCTCCCTGGAGCCGGAGGGAGACGCCCGCTCGGGGGCGGCCTAA

Translation (387 aa):
MSSKVYSTGSRAKDHQPSGPECLPLPEANAEAIDFLSSLHKEELQMLFFSETLAMVSDTGEPQGELTIEV
QRGKYQEKLGMLTYCLFVHASSRGFLDKMLCGNSLLGYLSEKLELMEQHSQDFIKFLILPMERKMSLLKQ
DDQLAVTRSIKEGEEVKTGVTSFPWSSIKGFISEAANLVLLRVMAWRRMVPSNARFLTLDTEGKLCYLTY
QNLGFQTIQVDHQQAEVFIVEQTVHAEEGIPMSCQYYLLSDGHLAKRIQVGSPGCCIITKMPILREEDEI
EPRPVFEKKPLVWEEDMELYSKFLDRKEELRLGHASYLRQHPEAHALISDFLLFLLLRQPEDVVTFAAEF
FGPFDPWRPSSPALGSSHRPNPFRSLEPEGDARSGAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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