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Report for CCDS29486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29486.1 Public Mus musculus 19 Slc22a20 23 108 98 CCDS HistoryNCBI Gene:381203Re-query CCDS DB by CCDS ID:29486.1Re-query CCDS DB by GeneID:381203See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29486.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041827.7 ENSMUSP00000049473.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041827.7Link to Ensembl Protein Viewer:ENSMUSP00000049473.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041827Re-query CCDS DB by Protein ID:ENSMUSP00000049473
Original member Current member NCBI NM_198650.2 NP_941052.1 Accepted alive Link to Nucleotide Sequence:NM_198650.2Link to Protein Sequence:NP_941052.1Re-query CCDS DB by Nucleotide ID:NM_198650Re-query CCDS DB by Protein ID:NP_941052Link to BLAST:NP_941052.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941052.1 556 Q80UJ1 556 100% 0 0

Chromosomal Locations for CCDS 29486.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5970457 5970553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5971399 5971605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5971719 5971827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5972856 5973070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5980360 5980475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5981630 5981753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5982833 5983001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5984798 5984952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5985580 5985683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5985766 5986140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGGCCTTCACAGACCTGCTGGATGCCCTGGGAGGCGTGGGTCGCTTCCAGCTTGTCTATACAGCCTTGC
TGCTGCTGCCCTGTGGGCTGCTGGCTTGCCATACCTTCCTACAGAACTTCACGGCTGCTGCACCCCCTCA
CCACTGCCAACATCCTGCCAACTACACAGAACCTACCACCAATGTCTCAGGGGTCTGGCTGAGGGCTGCC
ATACCCCTGAACCAGCATGGGGACCCCGAGCCGTGCCGGCGCTATGTAGAACCTCAGTGGGCCCTTCTGA
AACCCAACGCCTCCTCCCATGGGGTGGCCACCGAGGGCTGCAAGGATGGTTGGGTCTACGACCGAAGCAT
TTTCCCATCTACCATTGTGATGGAGTGGGACCTGGTGTGTGAGGCCCGCACCCTTCGTGACCTGGCTCAG
TCCATCTACATGTCCGGGGTGTTGGTGGGAGCCGCCTTGTTTGGTGGTCTTGCTGACAGGTTGGGTCGCA
AGGCCCCACTGGTGTGGTCGTACCTGCAGCTGGCAGTTTCGGGGGCTGCCACAGCGTATGTGGGCTCCTT
CAGTGCCTACTGCGTCTTCCGCTTCCTGATGGGCATGACCTTCTCCGGCATCATCCTTAACTCCCTCTCC
CTGGTTGTAGAATGGATGCCAACCAGAGGCCGTACAGTAGCAGGCATCTTGTTGGGTTTCTCCTTCACCT
TGGGCCAGCTCATCCTGGCTGGCGTGGCATACCTGATCCGGCCCTGGCGGTGGCTGCAGTTTGCTGTGTC
TGCTCCTTTTCTGGTCTTTTTCCTCTATTCTTGGTGGCTTCCAGAGTCATCCCGATGGCTCCTCCTTCAC
GGCAAGGCCCAGCAAGCTGTGCAGAACCTTCAGAAGGTGGCCATGATGAATGGCAGGAAGGCGGAAGGGG
AGAGGCTGACTACAGAGGTGGTGAGCTCCTACATCCAGGATGAGTTTGCAAGTGTCCGCACCTCCAACTC
CATCTTGGACCTCTTTAGAACCCCTGCCATCAGAAGGGTCACGTGCTGTCTCATGGGGGTCTGGTTCTCT
AATTCTGTGGCTTACTACGGCCTGGCCATGGACCTGCAGAAGTTTGGGCTCAGCATCTACCTGGTACAGG
CTCTGTTTGGGATCATCGATATCCCGGCCATGCTGGTCGCCACCACCACGATGATTTATGTGGGACGACG
GGCCACAGTGTCCTCCTTCCTCATACTAGCTGGGCTCATGGTCATTGCCAACATGTTTATGCCTGAGGAT
CTGCAGACCTTGCGGACAGTGCAGGCAGCGCTGGGCAAAGGCTGCCTGGCCAGCTCCTTCATCTGCGTGT
ATCTGTTCACGGGAGAACTCTATCCCACAGAGATCAGGCAGATGGGGATGGGATTTGCTTCTGTCAATGC
CCGCCTCGGAGGCTTGGTGGCACCCCTGATCACCACACTTGGCGAGATCAGTCCAGTTCTGCCACCTGTA
TCCTTTGGTGCCACTTCAGTCTTGGCTGGAATGGCTGTCGCCTGCTTCCTGACTGAGACCCGCAATGTGC
CACTGGTAGAAACTATTGCTGCAATGGAGAGACGAGTCAAACAAGGCCGTTCCAAAAGAGACACAGAACA
GAAGAGTGAAGAAATTTCTCTTCAGCAGCTGGGGGCTTCACCCCTCAAAGAAACCATTTAA

Translation (556 aa):
MAFTDLLDALGGVGRFQLVYTALLLLPCGLLACHTFLQNFTAAAPPHHCQHPANYTEPTTNVSGVWLRAA
IPLNQHGDPEPCRRYVEPQWALLKPNASSHGVATEGCKDGWVYDRSIFPSTIVMEWDLVCEARTLRDLAQ
SIYMSGVLVGAALFGGLADRLGRKAPLVWSYLQLAVSGAATAYVGSFSAYCVFRFLMGMTFSGIILNSLS
LVVEWMPTRGRTVAGILLGFSFTLGQLILAGVAYLIRPWRWLQFAVSAPFLVFFLYSWWLPESSRWLLLH
GKAQQAVQNLQKVAMMNGRKAEGERLTTEVVSSYIQDEFASVRTSNSILDLFRTPAIRRVTCCLMGVWFS
NSVAYYGLAMDLQKFGLSIYLVQALFGIIDIPAMLVATTTMIYVGRRATVSSFLILAGLMVIANMFMPED
LQTLRTVQAALGKGCLASSFICVYLFTGELYPTEIRQMGMGFASVNARLGGLVAPLITTLGEISPVLPPV
SFGATSVLAGMAVACFLTETRNVPLVETIAAMERRVKQGRSKRDTEQKSEEISLQQLGASPLKETI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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