NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58909.1 Public Homo sapiens 4 COPS4 24 110 108 CCDS HistoryNCBI Gene:51138Re-query CCDS DB by CCDS ID:58909.1Re-query CCDS DB by GeneID:51138See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58909.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509093.5 ENSP00000425976.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509093.5Link to Ensembl Protein Viewer:ENSP00000425976.1Re-query CCDS DB by Nucleotide ID:ENST00000509093Re-query CCDS DB by Protein ID:ENSP00000425976
Original member Current member NCBI NM_001258006.2 NP_001244935.1 Accepted alive Link to Nucleotide Sequence:NM_001258006.2Link to Protein Sequence:NP_001244935.1Re-query CCDS DB by Nucleotide ID:NM_001258006Re-query CCDS DB by Protein ID:NP_001244935Link to BLAST:NP_001244935.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001244935.1 352 Q9BT78-2 352 100% 0 0

Chromosomal Locations for CCDS 58909.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83035225 83035298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83045626 83045705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83049166 83049317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83049881 83049984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83056926 83057079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83057258 83057408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83063076 83063246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83066438 83066553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83075297 83075353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGCGGCAGCCGTGCGACAGGATTTGGCCCAGCTCATGAATTCGAGCGGCTCTCATAAAGATCTGGCTG
GCAAGTATCGTCAGATCCTGGAAAAAGCCATTCAGTTATCTGGAGCAGAACAACTAGAAGCTTTGAAAGC
TTTTGTGGAAGCAATGGTAAATGAGAATGTCAGTCTCGTGATCTCGCGGCAGTTGCTGACTGATTTTTGC
ACACATCTTCCTAACTTGCCTGATAGCACAGCCAAAGAAATCTATCACTTCACCTTGGAAAAGATCCAGC
CTAGAGTCATTTCATTTGAGGAGCAGGTTGCTTCCATAAGACAGCATCTTGCATCTATATATGAGAAAGA
AGAAGATTGGAGAAATGCAGCCCAAGTGTTGGTGGGAATTCCTTTGGAAACAGGACAAAAACAGTACAAT
GTAGATTATAAACTGGAGACTTACTTGAAGATTGCTAGGCTATATCTGGAGGATGATGATCCAGTCCAGG
CAGAGGCTTACATAAATCGAGCATCGTTGCTTCAGAATGAATCAACCAATGAACAATTACAGATACATTA
TAAGGTATGCTATGCACGTGTTCTTGATTATAGAAGAAAATTCATTGAAGCTGCACAAAGGTACAATGAG
CTCTCTTACAAGACAATAGTCCACGAAAGTGAAAGACTAGAGGCCTTAAAACATGCTTTGCACTGTACGA
TCTTAGCATCAGCAGGGCAGCAGCGTTCTCGGATGCTAGCTACTCTTTTTAAGGATGAAAGGTGCCAGCA
ACTTGCTGCCTATGGGATCCTAGAGAAAATGTATCTAGATAGGATCATCAGAGGAAATCAACTTCAAGAA
TTTGCTGCCATGCTGATGCCTCACCAAAAAGCAACTACAGCTGATGGTTCCAGCATCTTGGACAGAGCTG
TTATTGAACACAATTTGTTGTCTGCAAGCAAATTATATAATAATATTACCTTCGAAGAACTTGGAGCTCT
TTTAGAGATCCCTGCAGCTAAGCACGAGAAGCCCTGCCAACGTGGGATAAGCAGATCCAATCACTTTGTT
TCCAAGTGA

Translation (352 aa):
MAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFC
THLPNLPDSTAKEIYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYN
VDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEAAQRYNE
LSYKTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQE
FAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKHEKPCQRGISRSNHFV
SK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH