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Report for CCDS20293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20293.1 Public Mus musculus 6 Noto 23 108 98 CCDS HistoryNCBI Gene:384452Re-query CCDS DB by CCDS ID:20293.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089578.8 ENSMUSP00000087006.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089578.8Link to Ensembl Protein Viewer:ENSMUSP00000087006.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000089578Re-query CCDS DB by Protein ID:ENSMUSP00000087006
Original member Current member NCBI NM_001007472.2 NP_001007473.1 Accepted alive Link to Nucleotide Sequence:NM_001007472.2Link to Protein Sequence:NP_001007473.1Re-query CCDS DB by Nucleotide ID:NM_001007472Re-query CCDS DB by Protein ID:NP_001007473Link to BLAST:NP_001007473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007473.1 240 Q5TIS6 240 100% 0 0

Chromosomal Locations for CCDS 20293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85423991 85424354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85425398 85425609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85427957 85428103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGTCCAGCCCTGCTCCCTCAGGCACTCAGGTCCAGCCCGGGAGCCTGCGCCCCTGTCCGGGAGCTGTTT
CCCCAGTTGTCCCGCGCCGACTAGCTCGGGGACGCCTGGAGTCATCCTTCTCTGTCGAGGCCATCCTGGC
GAGACCCAAGACCCGAGAGCTGGCGGCCACCTCTCTGCCGCTCTCTACCTGCACCAGTCTGAACCTCCTC
GGTGCGGTGTCGCAGTACGGGGTCCTGCCCTGGGTGTGCTCCACAGGGTCTTGGCTGCCTGCCTACCTGA
GCGTGGGCGTCTACCCGCTGTGCTCCATGTCCTGCGTGCCCGGACTGAATGTCACTCACCACCAGCAGGG
CCTCAGGCTCACAGGATCAGAGCTACCTTACTGTCTAGGCCCTCTGAAATGGGCACCCACCGTGGACCTT
CGGGACCACGGGACCGAGAGACACACAAAGAGGGTTCGCACAACGTTTAACTTGCAGCAGCTGCAAGAGT
TGGAGAAGGTGTTTGCAAAGCAGCACAACCTGGTGGGGAAGGAGAGAGCCCAGCTGGCTGCCAGGCTGCA
CCTGACGGAGAATCAGGTGAGGATCTGGTTCCAAAATCGCAGGGTGAAGTATCAGAAGCAGCAAAAACTG
AAATTGCCTTCCTCCTCTGTCATGGAGGAGCCCTCCAGCAGCTCAGATGGCAACATCCAGAGTGAAGATG
CTGAGTTGGGAATTGGCAGTTAA

Translation (240 aa):
MSSPAPSGTQVQPGSLRPCPGAVSPVVPRRLARGRLESSFSVEAILARPKTRELAATSLPLSTCTSLNLL
GAVSQYGVLPWVCSTGSWLPAYLSVGVYPLCSMSCVPGLNVTHHQQGLRLTGSELPYCLGPLKWAPTVDL
RDHGTERHTKRVRTTFNLQQLQELEKVFAKQHNLVGKERAQLAARLHLTENQVRIWFQNRRVKYQKQQKL
KLPSSSVMEEPSSSSDGNIQSEDAELGIGS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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