NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11074.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11074.1 Public Homo sapiens 17 MIS12 24 110 108 CCDS HistoryNCBI Gene:79003Re-query CCDS DB by CCDS ID:11074.1Re-query CCDS DB by GeneID:79003See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11074.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381165.3 ENSP00000370557.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381165.3Link to Ensembl Protein Viewer:ENSP00000370557.3Re-query CCDS DB by Nucleotide ID:ENST00000381165Re-query CCDS DB by Protein ID:ENSP00000370557
Original member Current member EBI ENST00000573759.1 ENSP00000461252.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000573759.1Link to Ensembl Protein Viewer:ENSP00000461252.1Re-query CCDS DB by Nucleotide ID:ENST00000573759Re-query CCDS DB by Protein ID:ENSP00000461252
Original member Current member EBI ENST00000611091.5 ENSP00000484532.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000611091.5Link to Ensembl Protein Viewer:ENSP00000484532.1Re-query CCDS DB by Nucleotide ID:ENST00000611091Re-query CCDS DB by Protein ID:ENSP00000484532
Original member Current member NCBI NM_001258217.2 NP_001245146.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001258217.2Link to Protein Sequence:NP_001245146.1Re-query CCDS DB by Nucleotide ID:NM_001258217Re-query CCDS DB by Protein ID:NP_001245146Link to BLAST:NP_001245146.1
Original member Current member NCBI NM_001258218.2 NP_001245147.1 Accepted alive Link to Nucleotide Sequence:NM_001258218.2Link to Protein Sequence:NP_001245147.1Re-query CCDS DB by Nucleotide ID:NM_001258218Re-query CCDS DB by Protein ID:NP_001245147Link to BLAST:NP_001245147.1
Original member Current member NCBI NM_001258219.1 NP_001245148.1 Accepted alive Link to Nucleotide Sequence:NM_001258219.1Link to Protein Sequence:NP_001245148.1Re-query CCDS DB by Nucleotide ID:NM_001258219Re-query CCDS DB by Protein ID:NP_001245148Link to BLAST:NP_001245148.1
Original member Current member NCBI NM_001258220.1 NP_001245149.1 Accepted alive Link to Nucleotide Sequence:NM_001258220.1Link to Protein Sequence:NP_001245149.1Re-query CCDS DB by Nucleotide ID:NM_001258220Re-query CCDS DB by Protein ID:NP_001245149Link to BLAST:NP_001245149.1
Original member Current member NCBI NM_024039.3 NP_076944.1 Accepted alive Link to Nucleotide Sequence:NM_024039.3Link to Protein Sequence:NP_076944.1Re-query CCDS DB by Nucleotide ID:NM_024039Re-query CCDS DB by Protein ID:NP_076944Link to BLAST:NP_076944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245146.1 205 Q9H081 205 100% 0 0
NP_001245147.1 205 Q9H081 205 100% 0 0
NP_001245148.1 205 Q9H081 205 100% 0 0
NP_001245149.1 205 Q9H081 205 100% 0 0
NP_076944.1 205 Q9H081 205 100% 0 0

Chromosomal Locations for CCDS 11074.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 5488863 5489480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGTCTGTGGATCCAATGACCTACGAGGCCCAGTTCTTTGGCTTCACGCCACAAACGTGCATGCTTCGGA
TCTACATTGCATTTCAAGACTACCTATTTGAAGTGATGCAGGCCGTTGAACAGGTTATTCTGAAGAAGCT
GGATGGCATCCCAGACTGTGACATTAGCCCAGTGCAGATTCGCAAATGCACAGAGAAGTTTCTTTGCTTC
ATGAAAGGACATTTTGATAACCTTTTTAGCAAAATGGAGCAACTGTTTTTGCAGCTGATTTTACGTATTC
CCTCAAACATCTTGCTTCCTGAAGATAAATGTAAGGAGACACCTTATAGTGAGGAAGATTTTCAGCATCT
CCAGAAAGAAATTGAACAGTTACAGGAGAAGTACAAGACTGAATTATGTACTAAGCAGGCCCTTCTTGCA
GAATTAGAAGAGCAAAAAATTGTTCAGGCCAAACTCAAACAGACGTTGACTTTCTTTGATGAGCTTCATA
ATGTTGGCAGAGATCATGGGACTAGTGATTTTAGGGAGAGTTTAGTATCCCTGGTTCAGAACTCCAGAAA
ACTACAGAACATTAGAGACAATGTGGAAAAGGAATCGAAACGACTGAAAATATCTTAA

Translation (205 aa):
MSVDPMTYEAQFFGFTPQTCMLRIYIAFQDYLFEVMQAVEQVILKKLDGIPDCDISPVQIRKCTEKFLCF
MKGHFDNLFSKMEQLFLQLILRIPSNILLPEDKCKETPYSEEDFQHLQKEIEQLQEKYKTELCTKQALLA
ELEEQKIVQAKLKQTLTFFDELHNVGRDHGTSDFRESLVSLVQNSRKLQNIRDNVEKESKRLKIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH