NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57499.1 Public Mus musculus 7 Ceacam3 23 108 98 CCDS HistoryNCBI Gene:384557Re-query CCDS DB by CCDS ID:57499.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 57499.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108491.7 ENSMUSP00000104131.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108491.7Link to Ensembl Protein Viewer:ENSMUSP00000104131.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108491Re-query CCDS DB by Protein ID:ENSMUSP00000104131
Original member Current member NCBI NM_054059.2 NP_473400.1 Accepted alive Link to Nucleotide Sequence:NM_054059.2Link to Protein Sequence:NP_473400.1Re-query CCDS DB by Nucleotide ID:NM_054059Re-query CCDS DB by Protein ID:NP_473400Link to BLAST:NP_473400.1

Chromosomal Locations for CCDS 57499.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 17150400 17150448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17151523 17151882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17154717 17155076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17158103 17158462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17159695 17160054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17161596 17161943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 17162948 17163231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2121 nt):
ATGGATGTGTCCTCTGTGCTTCCCTGCAAGGGGTGTATCCTGCTCACAGCCTCCCTCTTAACCTGCTGGC
TCCTGCCCACCACTACCCAAGTCGACATCGAATCCTTACCACCCCAAGTGGTTGAAGGAGAAAATGTTCT
TCTACGGGTTGACAATCTGCCAGAGAATCTTCTAGGCTTTATCTGGTACAAAGGGGTGACAGACATGAGC
CTCGGAATTGCACTGTATTCACTGACCTATAGCAGAGGTGTGACGGGACCTGTGCACAGTGGTAGAGAGA
CATTGTACCGAAATGGGTCCCTGTGGATTCAAAATGTCACCCAGGAGGACACAGGATTCTACACCCTACG
AACCATAAGTAAACGTGGAGAAATTATATCAAATACATCCATGCACCTTCATGTGTACTCCTCCATTTTG
ACCTGTGGACGCCCTCCCACCTCTGCTCAGCTCAGTATTGAATCAGTGCCGCCCAGTGTTGCTAAAGGAG
AAAGTGTTCTTCTTCTTGCTCGAAATCTTCCAGAGAATCTTCGAGCCATTTTCTGGTACAAAGGGGCGAT
TGTGTTCAAGAATCTCGAGGTTGCCAGATATGTAATAGCCAAGAATTCAAGTGTGTTGGGCCCTGCTCAC
AGCGGTAGAGAGATAATGTATAGTAATGGATCCCTCGTGCTTCAGAATGTCACTCGGAATGATGCCGGAT
TCTACACCTTACGAACTCTGAGTACAGATCTGAAAGCTGAAGTAGCGCATGTGCAACTCCAGGTGGACAC
CTGTCTTTCAATCTACGAGAACCCTCCTACCTCTGCCCAGCTCACTGTTGAATCAGCACCGACCAGTGTT
GCTGAAGGGGAAAGTGTTCTTCTACTTGTTCACAATCTCCCAGAGAATCTCCGAGCCGTTTTCTGGTACA
AAGGGGCGATTGTGTTCAAGGACCTTGAGGTTGCACGGTATGTAATAGCCAAGAATTCAAGTGTTCCGGG
CCCTGCCCACAGCCGTAGAGAGACAGTGTACAGCAATGGATCCCTCCTGATTCAGAATGTCACTCGGAAT
GATGCCGGATTCTACACCTTACGAACTCTGAGTACAGATCTGAAAGCTGAAGTAGCGCATGTGCAACTCC
AGGTGGACACCTCCTTTTCCACGTGCTGTGACCCTCTCGCCTCTGCCCCACTCACGATCGATCCAGTTCC
ACAGCAGGCTGCTAAAGGAGAAAATGTTCTCCTCCAAGTTCACAATCTGCCAGAAGATCTGCGAATGTTT
TCCTGGTTCAAATCCATGTATAGCACCCAGATCTTTAAAATAGCAGAGTACAGCAGAGCCTTTAATTCTG
TCATCAGGGGCCCTGCACACAGCAGAAGAGAGATAGTGTATACCAATGGATCCCTGCTGCTCCAGGATGC
CACCGAGAAAGACACAGGCATGTACACACTACAAACGGTAGACAGAAATTTCAAAATTGAAACAGCACAT
GTGAAAATCCAGATAAATGCCTGTATTCACCCTTCTGCCACTGGCCAGCTCGTTATTGAATCAGTGCCAC
CCAATGTTGTTGAAGGGAGAGATGTTCTCCTACTTGTTCATAATATGCCAGAAAACCTTCGATCCTTTTC
CTGGTACAAAGGCGTAGCCATTGTCAGCAAACATGAAATTTCACGGAATATAATAACTAGTAATAGAAGT
GTGCTGGGGCCTGCACACAGTGGTAGAGAGACAGTGTATTCCAATGGATCTCTTCTGCTCCACAATGCCA
CCCAGAAGGACACTGGATTATACACCTTATTAACCTTAAACAGACGGTTTGAAACTCAAGGAATACATGT
GCACATCCACATATACAAGCCTGTGGTGCAGCCCTTCATGAGAGTCACGGACACCACAGTCAGAGTGCAG
AGCTCTGTGGTCCTCACCTGCCTCTCAGCTGACACTGGAATCTCCACCCAGTGGCTCTTCAACAACCAGA
ATCTGCGGCTCACAGAGAGGATGATGTTGTCCCCATCAAAGTGCCAACTCAGAATAGATCCTGTCAGGAG
GGAAGATGCTGGAGAGTATCGGTGTGAAGTCTCAAACCCAGTCAGTTCAAAGACCAGTCTCCCAGTCAGC
CTGACTGTGGTGATTGAGTGA

Translation (706 aa):
MDVSSVLPCKGCILLTASLLTCWLLPTTTQVDIESLPPQVVEGENVLLRVDNLPENLLGFIWYKGVTDMS
LGIALYSLTYSRGVTGPVHSGRETLYRNGSLWIQNVTQEDTGFYTLRTISKRGEIISNTSMHLHVYSSIL
TCGRPPTSAQLSIESVPPSVAKGESVLLLARNLPENLRAIFWYKGAIVFKNLEVARYVIAKNSSVLGPAH
SGREIMYSNGSLVLQNVTRNDAGFYTLRTLSTDLKAEVAHVQLQVDTCLSIYENPPTSAQLTVESAPTSV
AEGESVLLLVHNLPENLRAVFWYKGAIVFKDLEVARYVIAKNSSVPGPAHSRRETVYSNGSLLIQNVTRN
DAGFYTLRTLSTDLKAEVAHVQLQVDTSFSTCCDPLASAPLTIDPVPQQAAKGENVLLQVHNLPEDLRMF
SWFKSMYSTQIFKIAEYSRAFNSVIRGPAHSRREIVYTNGSLLLQDATEKDTGMYTLQTVDRNFKIETAH
VKIQINACIHPSATGQLVIESVPPNVVEGRDVLLLVHNMPENLRSFSWYKGVAIVSKHEISRNIITSNRS
VLGPAHSGRETVYSNGSLLLHNATQKDTGLYTLLTLNRRFETQGIHVHIHIYKPVVQPFMRVTDTTVRVQ
SSVVLTCLSADTGISTQWLFNNQNLRLTERMMLSPSKCQLRIDPVRREDAGEYRCEVSNPVSSKTSLPVS
LTVVIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH