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Report for CCDS57538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57538.1 Public Mus musculus 7 Scgb1b29 23 108 98 CCDS HistoryNCBI Gene:384589Re-query CCDS DB by CCDS ID:57538.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108094.4 ENSMUSP00000103729.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108094.4Link to Ensembl Protein Viewer:ENSMUSP00000103729.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108094Re-query CCDS DB by Protein ID:ENSMUSP00000103729
Original member Current member NCBI NM_001256066.1 NP_001242995.1 Accepted alive Link to Nucleotide Sequence:NM_001256066.1Link to Protein Sequence:NP_001242995.1Re-query CCDS DB by Nucleotide ID:NM_001256066Re-query CCDS DB by Protein ID:NP_001242995Link to BLAST:NP_001242995.1

Chromosomal Locations for CCDS 57538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 32441541 32441604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32441724 32441911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 32442693 32442722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGAAGCTTGCTGGTGCTGTGGTGATCCTCGGGGCTGCCCTGCTCCTCCTGACTTCAGGAGGAGATTGTG
GCATTTGCCCAGCTATAAAAGAGGATGTTCGTCTATTTTTAAATGGAACCTCAGAGGAGTATGTTGAGTA
CGTGAAACAATACAAAGATGACCCTGTAATACTGGAAAATACTGCAAAAATCAAGCAATGTGTCGATAGC
ACCTTGACAGAGGAAGACAAGATACATGCAACTACTTTCATAGAAAAGATAGAAGCCAGCCCGCTATGTT
GA

Translation (93 aa):
MKLAGAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKIKQCVDS
TLTEEDKIHATTFIEKIEASPLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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