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Report for CCDS7588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7588.1 Public Homo sapiens 10 TDRD1 24 110 108 CCDS HistoryNCBI Gene:56165Re-query CCDS DB by CCDS ID:7588.1Re-query CCDS DB by GeneID:56165See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7588.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000251864.7 ENSP00000251864.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000251864.7Link to Ensembl Protein Viewer:ENSP00000251864.2Re-query CCDS DB by Nucleotide ID:ENST00000251864Re-query CCDS DB by Protein ID:ENSP00000251864
Original member Current member NCBI NM_001385363.1 NP_001372292.1 Accepted alive Link to Nucleotide Sequence:NM_001385363.1Link to Protein Sequence:NP_001372292.1Re-query CCDS DB by Nucleotide ID:NM_001385363Re-query CCDS DB by Protein ID:NP_001372292Link to BLAST:NP_001372292.1
Original member Current member NCBI NM_198795.2 NP_942090.1 Accepted alive Link to Nucleotide Sequence:NM_198795.2Link to Protein Sequence:NP_942090.1Re-query CCDS DB by Nucleotide ID:NM_198795Re-query CCDS DB by Protein ID:NP_942090Link to BLAST:NP_942090.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372292.1 1189 Q9BXT4-3 1189 100% 0 0
NP_942090.1 1189 Q9BXT4-3 1189 100% 0 0

Chromosomal Locations for CCDS 7588.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 114187832 114188156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114190961 114191019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114199173 114199317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114201410 114201515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114202238 114202298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114203072 114203176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114203388 114203567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114204073 114204216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114204722 114204893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114206244 114206330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114210581 114210748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114210860 114210967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114211866 114212036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114213346 114213588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114213977 114214114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114217545 114217655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114218414 114218584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114220568 114220843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114221357 114221476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114222587 114222703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114226049 114226216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114227072 114227299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114227910 114227956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114228038 114228125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 114231486 114231517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3570 nt):
ATGAGTGTTAAATCGCCATTTAATGTGATGTCAAGAAATAATTTGGAAGCACCTCCTTGTAAGATGACAG
AGCCATTTAATTTTGAGAAAAATGAAAACAAGCTTCCACCACATGAGTCTTTAAGAAGTCCTGGAACACT
TCCTAACCACCCTAATTTCAGGCTGAAAAGCTCAGAGAATGGAAATAAAAAGAACAATTTTTTGCTTTGT
GAGCAAACCAAACAATATTTGGCTAGTCAGGAAGACAATTCAGTTTCTTCAAACCCGAATGGCATCAACG
GAGAAGTAGTTGGCTCCAAAGGAGACAGGAAAAAATTGCCAGCAGGAAACTCAGTGTCACCACCAAGTGC
TGAAAGTAATTCACCACCCAAAGAAGTGAATATTAAGCCTGGAAATAATGTACGTCCTGCAAAATCAAAA
AAACTAAACAAGTTGGTCGAGAATTCCTTGTCCATAAGTAATCCAGGGCTCTTCACCTCCTTAGGACCTC
CTCTTCGGTCCACAACTTGCCATCGCTGTGGCCTATTTGGATCGCTGAGGTGCTCTCAGTGCAAGCAGAC
CTACTATTGCTCCACAGCATGTCAAAGAAGAGACTGGTCTGCACACAGCATCGTGTGCAGGCCTGTTCAG
CCAAATTTCCACAAACTTGAAAATAAATCATCTATTGAAACAAAGGATGTGGAGGTAAACAATAAGAGTG
ACTGTCCACTTGGAGTTACTAAGGAAATAGCCATTTGGGCTGAGAGAATAATGTTTTCTGATTTGAGAAG
TCTACAACTCAAGAAAACCATGGAAATAAAGGGTACGGTTACCGAATTCAAACACCCAGGGGACTTCTAC
GTGCAGTTATATTCTTCAGAAGTTTTAGAATACATGAACCAACTCTCTGCCAGCTTAAAAGAAACATATG
CAAATGTGCATGAAAAAGACTATATTCCTGTTAAGGGGGAAGTTTGTATTGCCAAGTACACTGTTGATCA
GACCTGGAACAGAGCAATCATACAAAACGTTGATGTGCAGCAAAAGAAGGCACATGTCTTATATATTGAT
TATGGAAATGAAGAAATAATTCCATTAAACAGAATTTACCACCTCAACAGGAACATTGACTTGTTTCCTC
CTTGTGCCATAAAGTGCTTTGTAGCCAATGTTATCCCAGCAGAAGGGAATTGGAGCAGTGATTGTATCAA
AGCTACTAAACCACTGTTAATGGAGCAGTACTGCTCCATAAAGATTGTCGACATCTTGGAAGAGGAAGTG
GTTACCTTTGCTGTAGAAGTTGAGCTGCCAAATTCAGGAAAACTTTTAGACCATGTGCTTATAGAAATGG
GATATGGCTTGAAACCCAGTGGACAAGATTCTAAGAAGGAAAATGCAGATCAAAGTGATCCTGAAGATGT
TGGAAAAATGACAACTGAAAACAACATTGTCGTAGACAAAAGTGACCTAATCCCAAAAGTGTTAACTTTG
AATGTAGGTGATGAGTTTTGTGGTGTGGTTGCCCACATTCAAACACCAGAAGACTTCTTTTGTCAACAAC
TGCAAAGTGGCCGAAAGCTTGCTGAACTTCAGGCATCCCTTAGCAAGTACTGTGATCAGTTGCCTCCACG
CTCTGATTTTTATCCAGCCATTGGTGATATATGTTGTGCTCAGTTCTCAGAGGATGATCAGTGGTACCGT
GCCTCTGTTTTGGCTTACGCTTCTGAAGAATCTGTACTGGTCGGATATGTAGATTATGGAAACTTTGAAA
TCCTTAGTTTGATGAGACTTTGTCCCATAATCCCAAAGTTGTTGGAATTGCCAATGCAAGCTATAAAGTG
TGTACTAGCAGGAGTAAAGCCATCATTAGGAATTTGGACTCCAGAAGCTATTTGTCTCATGAAAAAACTT
GTACAGAACAAAATAATCACAGTGAAAGTGGTGGACAAGTTGGAAAACAGTTCCCTGGTGGAGCTTATTG
ATAAATCCGAGACGCCTCATGTCAGTGTTAGCAAAGTTCTCCTAGATGCAGGCTTTGCTGTGGGAGAACA
GAGTATGGTGACAGATAAACCCAGTGACGTGAAAGAAACCAGTGTTCCCTTGGGTGTGGAAGGAAAAGTA
AATCCATTGGAGTGGACATGGGTTGAACTTGGTGTTGACCAAACAGTAGATGTTGTGGTCTGTGTGATAT
ATAGTCCTGGAGAATTTTATTGCCATGTGCTTAAAGAGGATGCTTTAAAGAAACTCAATGATTTGAACAA
GTCATTAGCAGAACACTGCCAGCAGAAGTTACCTAATGGTTTCAAGGCAGAGATAGGACAACCTTGTTGT
GCTTTTTTTGCAGGTGATGGTAGTTGGTATCGTGCTTTAGTCAAGGAAATCTTACCAAATGGACATGTTA
AAGTACATTTTGTGGATTATGGAAACATCGAAGAAGTTACTGCAGATGAACTCCGAATGATATCATCAAC
ATTTTTAAACCTTCCCTTTCAGGGAATACGGTGCCAGTTAGCAGATATACAGTCTAGAAACAAACATTGG
TCTGAAGAAGCCATAACAAGATTCCAGATGTGTGTTGCTGGGATAAAATTGCAAGCCAGAGTGGTTGAAG
TCACTGAAAATGGGATAGGAGTTGAACTCACCGATCTCTCCACTTGTTATCCCAGAATAATTAGTGATGT
TCTGATTGATGAACATCTGGTTTTAAAATCTGCTTCACCACATAAAGACTTACCAAATGACAGACTTGTT
AATAAACATGAGCTTCAAGTTCATGTACAGGGACTTCAAGCTACCTCTTCAGCTGAGCAATGGAAGACGA
TAGAATTGCCAGTGGATAAAACTATACAAGCAAATGTATTAGAAATCATAAGCCCAAACTTGTTTTATGC
TCTACCAAAAGGGATGCCAGAAAATCAGGAAAAGCTGTGCATGTTGACAGCTGAATTATTAGAATACTGC
AATGCTCCGAAAAGTCGACCACCCTATAGACCAAGAATTGGAGACGCATGCTGTGCCAAATACACAAGTG
ATGATTTTTGGTATCGTGCAGTTGTTCTGGGGACATCAGACACTGATGTGGAAGTGCTCTATGCAGACTA
TGGAAACATTGAAACCCTGCCTCTTTGCAGAGTGCAACCAATCACCTCTAGCCACCTGGCGCTTCCTTTC
CAAATTATTAGATGTTCACTTGAAGGATTAATGGAATTGAATGGAAGCTCTTCTCAATTAATAATAATGC
TATTAAAAAATTTCATGTTGAATCAGAATGTAATGCTTTCTGTGAAAGGAATTACAAAGAATGTCCATAC
AGTGTCAGTTGAGAAATGTTCTGAGAATGGGACTGTCGATGTAGCTGATAAGCTAGTGACATTTGGTCTG
GCAAAAAACATCACACCTCAAAGGCAGAGTGCTTTAAATACAGAAAAGATGTATAGGATGAATTGCTGCT
GCACAGAGTTACAGAAACAAGTTGAAAAACATGAACATATTCTTCTCTTCCTCTTAAACAATTCAACCAA
TCAAAATAAATTTATTGAAATGAAAAAACTGTTAAAAAAAACAGCATCTCTTGGAGGTAAACCCTTATGA

Translation (1189 aa):
MSVKSPFNVMSRNNLEAPPCKMTEPFNFEKNENKLPPHESLRSPGTLPNHPNFRLKSSENGNKKNNFLLC
EQTKQYLASQEDNSVSSNPNGINGEVVGSKGDRKKLPAGNSVSPPSAESNSPPKEVNIKPGNNVRPAKSK
KLNKLVENSLSISNPGLFTSLGPPLRSTTCHRCGLFGSLRCSQCKQTYYCSTACQRRDWSAHSIVCRPVQ
PNFHKLENKSSIETKDVEVNNKSDCPLGVTKEIAIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHPGDFY
VQLYSSEVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYID
YGNEEIIPLNRIYHLNRNIDLFPPCAIKCFVANVIPAEGNWSSDCIKATKPLLMEQYCSIKIVDILEEEV
VTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTENNIVVDKSDLIPKVLTL
NVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSKYCDQLPPRSDFYPAIGDICCAQFSEDDQWYR
ASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAIKCVLAGVKPSLGIWTPEAICLMKKL
VQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKV
NPLEWTWVELGVDQTVDVVVCVIYSPGEFYCHVLKEDALKKLNDLNKSLAEHCQQKLPNGFKAEIGQPCC
AFFAGDGSWYRALVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADIQSRNKHW
SEEAITRFQMCVAGIKLQARVVEVTENGIGVELTDLSTCYPRIISDVLIDEHLVLKSASPHKDLPNDRLV
NKHELQVHVQGLQATSSAEQWKTIELPVDKTIQANVLEIISPNLFYALPKGMPENQEKLCMLTAELLEYC
NAPKSRPPYRPRIGDACCAKYTSDDFWYRAVVLGTSDTDVEVLYADYGNIETLPLCRVQPITSSHLALPF
QIIRCSLEGLMELNGSSSQLIIMLLKNFMLNQNVMLSVKGITKNVHTVSVEKCSENGTVDVADKLVTFGL
AKNITPQRQSALNTEKMYRMNCCCTELQKQVEKHEHILLFLLNNSTNQNKFIEMKKLLKKTASLGGKPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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