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Report for CCDS6784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6784.1 Public Homo sapiens 9 PTBP3 24 110 108 CCDS HistoryNCBI Gene:9991Re-query CCDS DB by CCDS ID:6784.1Re-query CCDS DB by GeneID:9991See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6784.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374255.6 ENSP00000363373.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374255.6Link to Ensembl Protein Viewer:ENSP00000363373.2Re-query CCDS DB by Nucleotide ID:ENST00000374255Re-query CCDS DB by Protein ID:ENSP00000363373
Original member Current member NCBI NM_005156.7 NP_005147.3 Accepted alive Link to Nucleotide Sequence:NM_005156.7Link to Protein Sequence:NP_005147.3Re-query CCDS DB by Nucleotide ID:NM_005156Re-query CCDS DB by Protein ID:NP_005147Link to BLAST:NP_005147.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005147.3 552 O95758-3 552 100% 0 0

Chromosomal Locations for CCDS 6784.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 112223851 112223983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112224133 112224210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112227411 112227627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112228380 112228472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112231380 112231413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112232099 112232238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112234820 112234897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112250929 112251103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112252678 112252788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112262435 112262599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112268049 112268195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112275844 112276013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112297841 112297916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112330441 112330474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 112333470 112333477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGATGGTGTTGTTACAGATCTTATAACAGTCGGTTTAAAGCGGGGATCTGATGAGCTTCTTTCTTCTG
GCATCATTAACGGACCTTTTACCATGAATAGTTCTACTCCTTCTACAGCTAATGGGAATGACAGCAAGAA
ATTTAAACGAGATAGACCTCCCTGTTCGCCTTCCCGTGTTCTCCATCTTCGAAAAATTCCATGTGATGTC
ACCGAAGCAGAGATCATATCATTAGGTCTACCATTTGGCAAAGTAACTAATCTTTTGATGTTGAAAGGAA
AAAGCCAGGCTTTCTTAGAAATGGCTTCTGAGGAAGCTGCCGTTACTATGGTGAATTATTACACTCCTAT
TACTCCTCACCTTCGAAGCCAGCCTGTTTATATTCAGTATTCCAATCACAGAGAACTTAAGACTGACAAT
CTACCTAATCAAGCTCGAGCCCAAGCTGCACTGCAGGCTGTCAGTGCCGTCCAATCAGGAAGCCTGGCCC
TTTCTGGAGGTCCTTCCAATGAAGGCACAGTCCTACCTGGGCAGAGCCCTGTGCTTCGAATAATTATTGA
AAACCTCTTTTACCCTGTTACCCTGGAAGTTCTTCATCAGATATTTTCTAAATTTGGCACAGTCTTGAAG
ATTATCACCTTTACAAAGAATAATCAGTTTCAAGCCTTGCTTCAGTATGCTGACCCAGTAAATGCACATT
ATGCCAAAATGGCTCTGGATGGCCAGAATATCTATAATGCATGCTGCACTCTGCGCATTGACTTCTCCAA
GCTCACCAGCCTTAATGTGAAATATAATAATGACAAAAGCAGAGACTTCACTCGCTTAGACCTTCCTACT
GGTGATGGCCAGCCATCCCTTGAACCCCCTATGGCTGCTGCTTTTGGTGCACCGGGTATAATTTCTTCAC
CATATGCAGGGGCTGCTGGATTTGCCCCAGCCATTGGATTTCCTCAAGCTACAGGTCTATCAGTTCCAGC
TGTTCCTGGAGCTCTTGGTCCTCTCACAATCACCTCTTCTGCTGTCACTGGAAGGATGGCCATTCCTGGG
GCTAGTGGTATACCAGGAAATTCTGTTCTACTCGTCACAAATCTCAATCCTGATCTTATCACACCACATG
GGCTTTTTATCCTATTTGGAGTCTATGGTGATGTACATCGAGTGAAGATTATGTTTAATAAGAAAGAAAA
TGCCTTGGTTCAGATGGCGGATGCAAATCAAGCTCAGCTAGCAATGAACCATCTAAGTGGTCAGAGACTT
TATGGGAAAGTGCTTCGTGCTACACTGTCCAAACATCAAGCAGTACAGCTTCCTCGAGAGGGACAAGAAG
ACCAAGGTCTGACTAAGGATTTCAGCAATAGTCCTTTGCATCGCTTTAAAAAGCCGGGCTCTAAAAACTT
CCAGAATATCTTTCCACCATCAGCCACTCTGCATCTTTCCAACATTCCCCCTTCTGTTACAGTGGATGAT
CTGAAGAACCTTTTCATAGAAGCTGGATGTTCAGTGAAGGCTTTTAAATTCTTTCAGAAAGATCGCAAAA
TGGCGCTCATTCAATTGGGATCTGTGGAAGAAGCAATTCAGGCCCTCATTGAGCTTCATAACCATGACCT
TGGAGAAAATCACCACCTCAGAGTTTCCTTCTCAAAATCTACAATCTGA

Translation (552 aa):
MDGVVTDLITVGLKRGSDELLSSGIINGPFTMNSSTPSTANGNDSKKFKRDRPPCSPSRVLHLRKIPCDV
TEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMVNYYTPITPHLRSQPVYIQYSNHRELKTDN
LPNQARAQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLK
IITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPT
GDGQPSLEPPMAAAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSSAVTGRMAIPG
ASGIPGNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRL
YGKVLRATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDD
LKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGENHHLRVSFSKSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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