NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42956.1 Public Homo sapiens 21 KRTAP10-3 24 110 108 CCDS HistoryNCBI Gene:386682Re-query CCDS DB by CCDS ID:42956.1See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42956.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391620.2 ENSP00000375478.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391620.2Link to Ensembl Protein Viewer:ENSP00000375478.1Re-query CCDS DB by Nucleotide ID:ENST00000391620Re-query CCDS DB by Protein ID:ENSP00000375478
Original member Current member NCBI NM_198696.3 NP_941969.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198696.3Link to Protein Sequence:NP_941969.2Re-query CCDS DB by Nucleotide ID:NM_198696Re-query CCDS DB by Protein ID:NP_941969Link to BLAST:NP_941969.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941969.2 221 P60369 221 100% 0 0

Chromosomal Locations for CCDS 42956.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 44558050 44558715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGCCACGTCTACCATGTCCGTCTGCTCCAGCGCTTACTCTGACTCCTGGCAGGTGGACGCCTGCCCAG
AGAGCTGCTGTGAGCCCCCCTGCTGCGCCACCAGCTGCTGCGCCCCGGCCCCCTGCCTGACCCTGGTCTG
CACCCCAGTGAGCTGTGTGTCCAGCCCCTGCTGCCAGGCGGCCTGTGAGCCCAGCCCCTGCCAGTCAGGC
TGCACCAGCTCCTGCACGCCCTCGTGCTGCCAGCAGTCTAGCTGCCAGCCAGCTTGCTGCACATCCTCCC
CCTGCCAGCAGGCCTGCTGCGTGCCTGTCTGCTGCAAGCCAGTCTGCTGTGTGCCCGTCTGCTGCAAGCC
TGTCTGCTGCAAGCCCATCTGCTGTGTGCCCGTCTGCTCTGGGGCTTCCTCTTCATGCTGCCAGCAGTCT
AGCCGCCAGCCGGCTTGCTGCACCACCTCCTGCTGCAGACCCTCCTCCTCCGTGTCCCTCCTCTGCCGCC
CCGTGTGCAGGTCCACCTGCTGTGTGCCCATCCCCTCCTGCTGTGCCCCTGCCTCCACCTGCCAGCCCAG
CTGCTGCCGCCCGGCCTCCTGCGTGTCCCTCCTCTGCCGCCCCACGTGCTCCCGCCTCTCTTCCGCGTGC
TGCGGCCTCTCCTCAGGCCAGAAGTCCAGCTGCTGA

Translation (221 aa):
MATSTMSVCSSAYSDSWQVDACPESCCEPPCCATSCCAPAPCLTLVCTPVSCVSSPCCQAACEPSPCQSG
CTSSCTPSCCQQSSCQPACCTSSPCQQACCVPVCCKPVCCVPVCCKPVCCKPICCVPVCSGASSSCCQQS
SRQPACCTTSCCRPSSSVSLLCRPVCRSTCCVPIPSCCAPASTCQPSCCRPASCVSLLCRPTCSRLSSAC
CGLSSGQKSSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH