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Report for CCDS11390.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11390.2 Public Homo sapiens 17 KRT34 24 110 108 CCDS HistoryNCBI Gene:3885Re-query CCDS DB by CCDS ID:11390.2See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11390.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394001.3 ENSP00000377570.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394001.3Link to Ensembl Protein Viewer:ENSP00000377570.3Re-query CCDS DB by Nucleotide ID:ENST00000394001Re-query CCDS DB by Protein ID:ENSP00000377570
Original member Current member NCBI NM_001386014.1 NP_001372943.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386014.1Link to Protein Sequence:NP_001372943.1Re-query CCDS DB by Nucleotide ID:NM_001386014Re-query CCDS DB by Protein ID:NP_001372943Link to BLAST:NP_001372943.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001372943.1 394 O76011 394 100% 0 0

Chromosomal Locations for CCDS 11390.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41378059 41378146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41378956 41379176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41379353 41379478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41379570 41379731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41381056 41381212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41381713 41381795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41381899 41382246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGTCTTACAGTTGTTGCCTGCCCAGCCTGGGCTGCCGCACCAGCTGCTCCTCCCGGCCCTGCGTGCCCC
CCAGCTGCCACGGCTACACCCTGCCTGGGGCCTGCAACATCCCCGCCAATGTGAGCAACTGCAACTGGTT
CTGTGAGGGCTCCTTCAATGGCAGCGAGAAGGAGACTATGCAGTTCCTGAACGACCGCCTGGCCAGCTAC
CTGGAGAAGGTGCGTCAGCTGGAGCGGGACAACGCGGAGCTGGAGAAACTCATCCAGGAGCGGTCCCAGC
AGCAGGAGCCCTTGCTGTGCCCCAGCTACCAGTCCTACTTCAAGACCATTGAGGAGCTCCAGCAGAAGAT
TCTGTGTGCCAAGGCTGAGAATGCCAGGCTGGTGGTGAACATTGACAATGCCAAGCTGGCCTCTGACGAC
TTCAGAAGCAAGTACCAGACGGAGCAGTCCCTGAGGCTGTTGGTGGAGTCGGACATCAACAGCATACGCA
GGATCCTGGATGAGCTGACCCTCTGCAAGTCTGACCTGGAGTCCCAGGTGGAGTCCCTGAGGGAGGAGCT
GATCTGCTTGAAGAAGAACCATGAGGAGGAGGTTAACACCCTGCGCTCCCAGCTTGGAGACCGCCTCAAC
GTGGAGGTGGACACTGCCCCCACTGTGGACCTGAACCAGGTCCTGAACGAGACCAGGAGTCAGTATGAGG
CTCTGGTGGAAATTAACCGCAGGGAAGTGGAGCAATGGTTCGCCACGCAGACCGAGGAGCTGAACAAGCA
GGTGGTATCCAGCTCAGAGCAGCTGCAGTCCTGCCAGGCGGAGATCATCGAGCTGAGACGCACAGTCAAC
GCCCTGGAGATCGAGCTGCAGGCCCAGCACAACCTGCGAGACTCTCTGGAAAACACGCTGACGGAGAGCG
AGGCCCACTACAGCTCCCAGCTGTCCCAGGTGCAGAGCCTGATCACCAACGTGGAGTCTCAGCTGGCAGA
GATCCGCTGTGACCTGGAGCGGCAGAACCAGGAGTACCAGGTGCTGCTGGACGTGCGTGCCCGGCTGGAG
TGTGAGATCAACACGTACCGGAGCCTCCTGGAGAGTGAGGACTGCAAGCTCCCCTGCAACCCATGCGCCA
CCACCAATGCTAGTGGCAACTCCTGTGGACCCTGTGGCACCTCTCAAAAGGGTTGCTGTAATTGA

Translation (394 aa):
MSYSCCLPSLGCRTSCSSRPCVPPSCHGYTLPGACNIPANVSNCNWFCEGSFNGSEKETMQFLNDRLASY
LEKVRQLERDNAELEKLIQERSQQQEPLLCPSYQSYFKTIEELQQKILCAKAENARLVVNIDNAKLASDD
FRSKYQTEQSLRLLVESDINSIRRILDELTLCKSDLESQVESLREELICLKKNHEEEVNTLRSQLGDRLN
VEVDTAPTVDLNQVLNETRSQYEALVEINRREVEQWFATQTEELNKQVVSSSEQLQSCQAEIIELRRTVN
ALEIELQAQHNLRDSLENTLTESEAHYSSQLSQVQSLITNVESQLAEIRCDLERQNQEYQVLLDVRARLE
CEINTYRSLLESEDCKLPCNPCATTNASGNSCGPCGTSQKGCCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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