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Report for CCDS86824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86824.1 Public Homo sapiens 2 MFSD2B 24 110 108 CCDS HistoryNCBI Gene:388931Re-query CCDS DB by CCDS ID:86824.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 86824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338315.6 ENSP00000342501.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338315.6Link to Ensembl Protein Viewer:ENSP00000342501.4Re-query CCDS DB by Nucleotide ID:ENST00000338315Re-query CCDS DB by Protein ID:ENSP00000342501
Original member Current member NCBI NM_001346880.2 NP_001333809.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001346880.2Link to Protein Sequence:NP_001333809.1Re-query CCDS DB by Nucleotide ID:NM_001346880Re-query CCDS DB by Protein ID:NP_001333809Link to BLAST:NP_001333809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333809.1 504 A6NFX1 504 100% 0 0

Chromosomal Locations for CCDS 86824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24010097 24010192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24013285 24013410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24016156 24016280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24016845 24016968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24017286 24017364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24017458 24017588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24021648 24021738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24021849 24021970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24022433 24022516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24022822 24022902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24023130 24023239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24023583 24023726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24024095 24024271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24025432 24025456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGCGGCGCCCCCTGCACCAGCCGCCAAGGGGTCCCCGCAGCCGGAGCCGCACGCCCCAGAGCCCGGCC
CGGGGAGCGCCAAGCGAGGGCGAGAGGACAGCAGAGCCGGTCGCCTCTCATTCTGTACAAAGGTGTGCTA
TGGCATTGGTGGGGTCCCCAACCAGATAGCCTCCAGCGCCACAGCCTTTTACCTGCAGCTTTTCCTGCTT
GATATAGCACAGATCCCTGCCGCCCAGGTGTCACTTGTTCTGTTTGGGGGAAAAGTGTCTGGGGCGGCTG
CTGACCCTGTGGCTGGGTTCTTCATCAACAGGAGCCAGAGGACAGGGTCTGGACGGCTCATGCCTTGGGT
GCTGGGCTGCACCCCCTTCATCGCCCTGGCCTACTTCTTCCTGTGGTTCCTGCCCCCCTTCACCAGCCTG
CGAGGCCTCTGGTACACGACTTTCTACTGCCTGTTCCAGGCCCTGGCCACGTTCTTCCAGGTGCCCTACA
CAGCGCTCACCATGCTGCTGACTCCCTGCCCAAGGGAGCGGGACTCGGCCACCGCCTACCGGATGACTGT
GGAGATGGCGGGAACACTGATGGGGGCCACTGTCCACGGGCTCATCGTGTCCGGCGCCCACAGACCCCAC
AGGTGCGAGGCCACTGCGACCCCGGGGCCAGTCACTGTCTCCCCGAATGCAGCCCATCTCTACTGCATTG
CGGCTGCCGTGGTTGTAGTGACTTACCCCGTGTGCATCAGTTTACTGTGCCTAGGGGTGAAGGAGCGGCC
AGACCCCTCTGCCCCAGCCTCAGGCCCAGGCTTGAGTTTCCTGGCTGGGCTGAGCCTCACTACCCGGCAC
CCACCCTACCTGAAGCTGGTGATCTCCTTCCTGTTCATCTCTGCTGCTGTTCAGGTGGAGCAGAGCTACC
TGGTCCTGTTCTGTACACATGCCTCCCAGCTACACGACCACGTCCAGGGCCTGGTACTAACTGTCCTGGT
CTCAGCCGTGCTGAGCACCCCGCTGTGGGAGTGGGTTCTCCAGCGCTTTGGGAAGAAGACGTCAGCCTTT
GGGATCTTTGCGATGGTGCCCTTTGCGATCTTGCTGGCTGCTGTGCCCACAGCACCTGTGGCATATGTCG
TGGCCTTTGTATCTGGCGTGAGCATTGCTGTGTCCTTGCTGCTACCCTGGTCCATGCTGCCAGACGTGGT
GGATGACTTTCAGCTGCAGCACCGTCACGGGCCAGGCCTGGAGACCATCTTCTACTCCTCCTACGTCTTC
TTCACCAAGCTGTCTGGCGCATGTGCCCTGGGCATCTCCACCCTCAGTCTGGAGTTCTCGGGGTATAAGG
CAGGGGTCTGCAAGCAAGCAGAGGAGGTGGTGGTCACCCTCAAAGTCCTCATTGGCGCCGTGCCCACCTG
CATGATCCTTGCTGGGCTCTGCATCCTCATGGTCGGCTCCACTCCAAAGACACCCAGTCGGGACGCCTCC
AGCCGGCTGAGCCTTCGGAGGAGGACCAGCTACAGCCTGGCCTAA

Translation (504 aa):
MAAPPAPAAKGSPQPEPHAPEPGPGSAKRGREDSRAGRLSFCTKVCYGIGGVPNQIASSATAFYLQLFLL
DIAQIPAAQVSLVLFGGKVSGAAADPVAGFFINRSQRTGSGRLMPWVLGCTPFIALAYFFLWFLPPFTSL
RGLWYTTFYCLFQALATFFQVPYTALTMLLTPCPRERDSATAYRMTVEMAGTLMGATVHGLIVSGAHRPH
RCEATATPGPVTVSPNAAHLYCIAAAVVVVTYPVCISLLCLGVKERPDPSAPASGPGLSFLAGLSLTTRH
PPYLKLVISFLFISAAVQVEQSYLVLFCTHASQLHDHVQGLVLTVLVSAVLSTPLWEWVLQRFGKKTSAF
GIFAMVPFAILLAAVPTAPVAYVVAFVSGVSIAVSLLLPWSMLPDVVDDFQLQHRHGPGLETIFYSSYVF
FTKLSGACALGISTLSLEFSGYKAGVCKQAEEVVVTLKVLIGAVPTCMILAGLCILMVGSTPKTPSRDAS
SRLSLRRRTSYSLA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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