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Report for CCDS31381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31381.1 Public Homo sapiens 11 OR51Q1 24 110 108 CCDS HistoryNCBI Gene:390061Re-query CCDS DB by CCDS ID:31381.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 31381.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300778.4 ENSP00000300778.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300778.4Link to Ensembl Protein Viewer:ENSP00000300778.4Re-query CCDS DB by Nucleotide ID:ENST00000300778Re-query CCDS DB by Protein ID:ENSP00000300778
Original member Current member NCBI NM_001004757.2 NP_001004757.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004757.2Link to Protein Sequence:NP_001004757.1Re-query CCDS DB by Nucleotide ID:NM_001004757Re-query CCDS DB by Protein ID:NP_001004757Link to BLAST:NP_001004757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004757.1 317 Q8NH59 317 100% 0 0

Chromosomal Locations for CCDS 31381.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5422201 5423154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGTCCCAGGTGACTAACACCACACAAGAAGGCATCTACTTCATCCTCACGGACATCCCTGGATTTGAGG
CC
TCCCACATCTGGATCTCCATCCCCGTCTGCTGTCTCTACACCATCTCCATCATGGGCAATACCACCAT
C
CTCACTGTCATTCGCACAGAGCCATCTGTCCACCAGCGCATGTATCTGTTTCTCTCCATGCTGGCCCTG
ACG
GACCTGGGTCTCACCCTCACCACCCTACCCACAGTCATGCAGCTTCTCTGGTTCAACGTTCGTAGAA
TC
AGCTCTGAGGCCTGTTTTGCTCAGTTTTTCTTCCTTCATGGATTCTCCTTTATGGAGTCTTCTGTCCT
C
CTGGCTATGTCCGTTGACTGCTATGTGGCCATCTGCTGTCCCCTCCATTATGCCTCCATCCTCACCAAT
GAA
GTCATTGGTAGAACTGGGTTAGCCATCATTTGCTGCTGTGTTCTGGCGGTTCTTCCCTCCCTTTTCT
TA
CTCAAGCGACTGCCTTTCTGCCACTCCCACCTTCTCTCTCGCTCCTATTGCCTCCACCAGGATATGAT
C
CGCCTGGTCTGTGCTGACATCAGGCTCAACAGCTGGTATGGATTTGCTCTTGCCTTGCTCATTATTATC
GTG
GATCCTCTGCTCATTGTGATCTCCTATACACTTATTCTGAAAAATATCTTGGGCACAGCCACCTGGG
CT
GAGCGACTCCGTGCCCTCAATAACTGCCTGTCCCACATTCTAGCTGTCCTGGTCCTCTACATTCCCAT
G
GTTGGTGTATCTATGACTCATCGCTTTGCCAAGCATGCCTCTCCACTGGTCCATGTTATCATGGCCAAT
ATC
TACCTGCTGGCACCCCCGGTGATGAACCCCATCATTTACAGTGTAAAGAACAAGCAGATCCAATGGG
GA
ATGTTAAATTTCCTTTCCCTCAAAAATATGCATTCAAGATGA


Translation (317 aa):
MSQVTNTTQEGIYFILTDIPGFEASHIWISIPVCCLYTISIMGNTTILTVIRTEPSVHQRMYLFLSMLAL
T
DLGLTLTTLPTVMQLLWFNVRRISSEACFAQFFFLHGFSFMESSVLLAMSVDCYVAICCPLHYASILTN
E
VIGRTGLAIICCCVLAVLPSLFLLKRLPFCHSHLLSRSYCLHQDMIRLVCADIRLNSWYGFALALLIII
V
DPLLIVISYTLILKNILGTATWAERLRALNNCLSHILAVLVLYIPMVGVSMTHRFAKHASPLVHVIMAN
I
YLLAPPVMNPIIYSVKNKQIQWGMLNFLSLKNMHSR




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser