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Report for CCDS31397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31397.1 Public Homo sapiens 11 OR52N5 24 110 108 CCDS HistoryNCBI Gene:390075Re-query CCDS DB by CCDS ID:31397.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317093.2 ENSP00000322866.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317093.2Link to Ensembl Protein Viewer:ENSP00000322866.2Re-query CCDS DB by Nucleotide ID:ENST00000317093Re-query CCDS DB by Protein ID:ENSP00000322866
Original member Current member EBI ENST00000641181.1 ENSP00000493190.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641181.1Link to Ensembl Protein Viewer:ENSP00000493190.1Re-query CCDS DB by Nucleotide ID:ENST00000641181Re-query CCDS DB by Protein ID:ENSP00000493190
Original member Current member NCBI NM_001001922.2 NP_001001922.2 Accepted alive Link to Nucleotide Sequence:NM_001001922.2Link to Protein Sequence:NP_001001922.2Re-query CCDS DB by Nucleotide ID:NM_001001922Re-query CCDS DB by Protein ID:NP_001001922Link to BLAST:NP_001001922.2
Original member Current member NCBI NM_001385662.1 NP_001372591.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001385662.1Link to Protein Sequence:NP_001372591.1Re-query CCDS DB by Nucleotide ID:NM_001385662Re-query CCDS DB by Protein ID:NP_001372591Link to BLAST:NP_001372591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001922.2 324 Q8NH56 324 100% 0 0
NP_001372591.1 324 Q8NH56 324 100% 0 0

Chromosomal Locations for CCDS 31397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5777660 5778634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGCCTCTATTTAATTCATTATGCTGGTTTCCAACAATTCATGTGACTCCTCCATCTTTTATTCTTAATG
GAATACCTGGTCTGGAAAGAGTACATGTATGGATCTCCCTCCCACTCTGCACAATGTACATCATCTTCCT
TGTGGGGAATCTTGGTCTTGTGTACCTCATTTATTATGAGGAGTCCTTACATCATCCGATGTATTTTTTT
TTTGGCCATGCTCTCTCCCTCATTGACCTCCTTACCTGCACCACCACTCTACCCAATGCACTCTGCATCT
TCTGGTTCAGTCTCAAAGAAATTAACTTCAATGCTTGCTTGGCCCAGATGTTCTTTGTTCATGGGTTCAC
AGGTGTGGAGTCTGGGGTGCTCATGCTCATGGCTCTAGACCGCTATGTAGCCATTTGCTACCCTTTGCGT
TATGCTACCACACTCACCAACCCTATCATTGCCAAGGCTGAGCTTGCCACCTTCCTGAGGGGTGTATTGC
TGATGATTCCTTTCCCATTCTTGGTTAAGCGTTTGCCTTTCTGCCAAAGCAATATTATCTCCCATACGTA
CTGCGACCACATGTCTGTAGTAAAGCTATCTTGTGCCAGCATCAAGGTCAATGTAATCTATGGTCTAATG
GTTGCTCTCCTGATTGGAGTGTTTGACATTTGTTGTATATCTTTGTCTTACACTTTGATCCTCAAGGCAG
CGATCAGCCTCTCTTCATCAGATGCTCGGCAGAAGGCTTTCAGCACCTGCACTGCCCATATATCTGCCAT
CATCATCACCTATGTTCCAGCATTCTTCACTTTCTTTGCCCACCGTTTTGGGGGACACACAATTCCCCCT
TCTCTTCACATCATTGTGGCTAATCTTTATCTTCTTCTTCCCCCAACTCTAAACCCTATTGTTTATGGAG
TAAAGACAAAACAGATACGCAAGAGTGTCATAAAGTTCTTCCAGGGTGATAAGGGTGCAGGTTGA

Translation (324 aa):
MPLFNSLCWFPTIHVTPPSFILNGIPGLERVHVWISLPLCTMYIIFLVGNLGLVYLIYYEESLHHPMYFF
FGHALSLIDLLTCTTTLPNALCIFWFSLKEINFNACLAQMFFVHGFTGVESGVLMLMALDRYVAICYPLR
YATTLTNPIIAKAELATFLRGVLLMIPFPFLVKRLPFCQSNIISHTYCDHMSVVKLSCASIKVNVIYGLM
VALLIGVFDICCISLSYTLILKAAISLSSSDARQKAFSTCTAHISAIIITYVPAFFTFFAHRFGGHTIPP
SLHIIVANLYLLLPPTLNPIVYGVKTKQIRKSVIKFFQGDKGAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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