NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1335.1 Public Homo sapiens 1 TOR1AIP1 24 110 108 CCDS HistoryNCBI Gene:26092Re-query CCDS DB by CCDS ID:1335.1Re-query CCDS DB by GeneID:26092See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000606911.7 ENSP00000476687.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000606911.7Link to Ensembl Protein Viewer:ENSP00000476687.1Re-query CCDS DB by Nucleotide ID:ENST00000606911Re-query CCDS DB by Protein ID:ENSP00000476687
Original member Current member NCBI NM_015602.4 NP_056417.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015602.4Link to Protein Sequence:NP_056417.2Re-query CCDS DB by Nucleotide ID:NM_015602Re-query CCDS DB by Protein ID:NP_056417Link to BLAST:NP_056417.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056417.2 583 Q5JTV8-1 583 100% 0 0

Chromosomal Locations for CCDS 1335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 179882503 179882977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179884692 179884769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179889313 179889369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179900126 179900167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179901302 179901388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179903966 179904022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179907823 179907864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179908605 179908673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179913998 179914054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179917452 179918239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGCGGGCGACGGGCGGCGGGCAGAGGCGGTGCGGGAAGGATGGGGTGTGTACGTCACCCCCAGGGCCC
CCATCCGAGAGGGAAGGGGCCGGCTCGCCCCTCAAAATGGCGGCAGCAGCGATGCGCCTGCGTACAGAAC
TCCTCCGTCGCGCCAGGGCCGGCGGGAAGTGAGGTTCTCGGACGAGCCGCCAGAAGTGTACGGCGACTTC
GAGCCCCTGGTGGCCAAAGAAAGGTCCCCGGTGGGAAAACGAACCCGGCTAGAAGAGTTCCGGTCCGATT
CTGCGAAAGAGGAAGTGAGAGAAAGCGCGTACTACCTTCGGTCTAGGCAGCGGAGGCAGCCGCGACCCCA
GGAAACCGAGGAAATGAAGACGCGAAGGACTACCCGCCTTCAGCAGCAGCACTCAGAGCAGCCTCCGCTA
CAGCCGTCTCCTGTTATGACCAGGAGAGGGCTGCGGGACTCTCATTCCTCTGAAGAGGATGAAGCATCTT
CCCAAACTGATTTAAGCCAAACGATCTCAAAGAAAACTGTCAGGAGCATACAAGAGGCTCCAGTGAGTGA
AGATCTTGTAATCAGGTTACGTCGACCCCCTCTAAGATACCCAAGATATGAAGCCACCAGTGTCCAACAG
AAGGTCAATTTCTCTGAAGAAGGAGAAACTGAAGAAGATGATCAAGACAGCTCTCACAGCAGTGTCACTA
CTGTTAAGGCCAGATCCAGGGATTCTGATGAATCTGGAGATAAAACCACCAGATCATCTAGTCAATATAT
AGAATCATTTTGGCAGTCATCACAAAGTCAAAACTTCACAGCTCATGATAAGCAACCTTCAGTGCTAAGC
TCAGGATATCAAAAAACTCCCCAGGAATGGGCCCCACAAACTGCAAGAATAAGGACCAGGATGCAAAATG
ACAGCATTCTGAAATCAGAGCTTGGAAACCAGTCACCATCAACCTCCAGCCGACAAGTGACTGGACAACC
CCAAAATGCATCTTTTGTCAAGAGGAACCGGTGGTGGCTACTTCCTCTGATAGCTGCTCTTGCCTCTGGG
AGTTTTTGGTTCTTTAGTACTCCTGAGGTAGAAACCACTGCTGTTCAAGAGTTCCAGAACCAGATGAATC
AACTTAAGAATAAGTACCAAGGTCAAGATGAGAAGCTGTGGAAAAGGAGCCAAACATTCCTGGAAAAACA
TCTTAATAGCTCCCATCCTCGGTCTCAGCCTGCTATCTTACTGCTCACTGCTGCCCGAGATGCTGAAGAA
GCACTTAGGTGTCTGAGTGAACAAATTGCTGATGCCTATTCTTCTTTTCGTAGTGTCCGTGCCATCCGGA
TTGATGGGACAGATAAAGCTACTCAAGACAGTGATACTGTCAAACTAGAGGTAGACCAAGAACTGAGCAA
TGGATTTAAGAATGGCCAGAATGCAGCTGTGGTACACCGCTTTGAGTCATTTCCCGCAGGCTCTACTTTG
ATCTTCTACAAATATTGTGACCATGAAAACGCGGCCTTCAAAGATGTAGCCTTAGTCCTGACTGTCTTAT
TGGAGGAAGAGACACTTGGAACAAGTCTAGGCCTAAAGGAAGTTGAAGAAAAAGTAAGAGATTTTCTTAA
AGTCAAGTTCACCAATTCTAACACACCCAACTCCTACAATCATATGGACCCAGACAAACTGAATGGCCTC
TGGAGCCGTATTTCTCACTTAGTTCTGCCTGTGCAACCTGAAAATGCCCTGAAAAGGGGCATCTGCTTAT
AA

Translation (583 aa):
MAGDGRRAEAVREGWGVYVTPRAPIREGRGRLAPQNGGSSDAPAYRTPPSRQGRREVRFSDEPPEVYGDF
EPLVAKERSPVGKRTRLEEFRSDSAKEEVRESAYYLRSRQRRQPRPQETEEMKTRRTTRLQQQHSEQPPL
QPSPVMTRRGLRDSHSSEEDEASSQTDLSQTISKKTVRSIQEAPVSEDLVIRLRRPPLRYPRYEATSVQQ
KVNFSEEGETEEDDQDSSHSSVTTVKARSRDSDESGDKTTRSSSQYIESFWQSSQSQNFTAHDKQPSVLS
SGYQKTPQEWAPQTARIRTRMQNDSILKSELGNQSPSTSSRQVTGQPQNASFVKRNRWWLLPLIAALASG
SFWFFSTPEVETTAVQEFQNQMNQLKNKYQGQDEKLWKRSQTFLEKHLNSSHPRSQPAILLLTAARDAEE
ALRCLSEQIADAYSSFRSVRAIRIDGTDKATQDSDTVKLEVDQELSNGFKNGQNAAVVHRFESFPAGSTL
IFYKYCDHENAAFKDVALVLTVLLEEETLGTSLGLKEVEEKVRDFLKVKFTNSNTPNSYNHMDPDKLNGL
WSRISHLVLPVQPENALKRGICL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH