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Report for CCDS85927.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85927.1 Public Homo sapiens 1 PRAMEF13 24 110 108 CCDS HistoryNCBI Gene:400736Re-query CCDS DB by CCDS ID:85927.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 85927.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000625019.3 ENSP00000491259.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000625019.3Link to Ensembl Protein Viewer:ENSP00000491259.1Re-query CCDS DB by Nucleotide ID:ENST00000625019Re-query CCDS DB by Protein ID:ENSP00000491259
Original member Current member NCBI NM_001291380.1 NP_001278309.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001291380.1Link to Protein Sequence:NP_001278309.1Re-query CCDS DB by Nucleotide ID:NM_001291380Re-query CCDS DB by Protein ID:NP_001278309Link to BLAST:NP_001278309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278309.1 474 Q5VWM6 474 100% 0 0

Chromosomal Locations for CCDS 85927.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 13196823 13197381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13198328 13198906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 13199303 13199589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGAGCATCCAGGCCCCACCCAGACTCCTGGAGCTGGCGGGGCAGAGCCTGCTGAGAGACCAGGCCTTGT
CCATCTCTGCCATGGAGGAGCTGCCCAGGGTGCTCTATCTCCCACTCTTCATGGAGGCCTTCCGCAGGAG
ACACTTCCAGACTCTGACGGTGATGGTGCAGGCCTGGCCCTTCACCTGCCTCCCTCTGGGATCACTGATG
AAGACGCTTCATTTGGAGACCTTAAAAGCATTGCTGGAAGGGCTTCATATGCTGCTTACACAGAAGGATC
GCCCCAGGAGGCGGAAACTTCAAGTGCTGGATTTGCGGGATGTTGACGAGAATTTCTGGGCCAGATGGCC
TGGAGCCTGGGCCCTGTCCTGCTTCCCAGAGACCATGAGTAAGAGGCAGACAGCAGAGGACCGTCCAAGG
ATGGGAGAGCACCAGCCCTTAAAGGTGTTCATAGACATCTGCCTCAAGGAAATACCCCAGGATGAATGCC
TGAGATACCTCTTCCAGTGGGTTTACCAAAGGAGAGGTTTAGTACACCTGTGCTGTAGTAAGCTGGTCAA
TTATCTAACGCCGATTAAACATCTCAGAAAGTCATTGAAAATAATATACCTGAATAGTATTCAAGAGCTG
GAAATTCACAACATGTCCTGGCCACGTCTGATAAGAAAGCTTCGTTGTTACCTGAAGGAGATGAAGACTC
TTGGCAAACTCGTTTTCTCCAGGTGCCATCATTCCACGTCAGATAATGAACTCGAAGGACGGTTAGTCAC
CAAATTCAGCTCTGTGTTCCTCGGGCTGGAACACCTCCAGTTGCTTAAAATAAAATTGATCACCTTCTTC
AGTGGGCACCTGGAACAGCTGATCAGGTGCCTCCAGAACCCCTTGGAGAACTTGGAATTAACTTATGGCT
ACCTATTGGAAGAGGATGTGAAGTGTCTCTCCCAGTACCCAAGCCTCGGTTACCTAAAGCATCTGAATCT
CAGCTACGTGCTGCTGTTCCGCATCAGTCTTGAACCCCTCGGAGCTCTGCTAGAGAAAATTGCTGCCTCT
CTCGAAACCCTCATCTTGGAGGGCTGTCAGATCCACTACTCCCAACTCAGTGCCATCCTGCCTGGCCTGA
GCCGCTGCTCCCAGCTCACCACCTTCTACTTTGGCAGAAATTGTATGTCTATGGGTGCCCTGAAGGACCT
GCTGCGCCACACCAGTGGGCTGAGCAAGTTAAGCCTGGAGACGTATCCTGCCCCTGAGGAGAGTTTGAAT
TCCTTGGTTCGTGTCAATTGGGAGATCTTCACCCCACTTCGGGCTGAGCTGATGTGTACACTGAGGGAAG
TCAGGCAGCCCAAGAGGATCTTCATTGGTCCCACCCCCTGCCCTTCCTGTGGCTCATCACTGTCTGAGGA
ACTGGAGCTCCATCTTTGCTGCTAG

Translation (474 aa):
MSIQAPPRLLELAGQSLLRDQALSISAMEELPRVLYLPLFMEAFRRRHFQTLTVMVQAWPFTCLPLGSLM
KTLHLETLKALLEGLHMLLTQKDRPRRRKLQVLDLRDVDENFWARWPGAWALSCFPETMSKRQTAEDRPR
MGEHQPLKVFIDICLKEIPQDECLRYLFQWVYQRRGLVHLCCSKLVNYLTPIKHLRKSLKIIYLNSIQEL
EIHNMSWPRLIRKLRCYLKEMKTLGKLVFSRCHHSTSDNELEGRLVTKFSSVFLGLEHLQLLKIKLITFF
SGHLEQLIRCLQNPLENLELTYGYLLEEDVKCLSQYPSLGYLKHLNLSYVLLFRISLEPLGALLEKIAAS
LETLILEGCQIHYSQLSAILPGLSRCSQLTTFYFGRNCMSMGALKDLLRHTSGLSKLSLETYPAPEESLN
SLVRVNWEIFTPLRAELMCTLREVRQPKRIFIGPTPCPSCGSSLSEELELHLCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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