NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47000.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47000.2 Public Homo sapiens 4 NICOL1 24 110 108 CCDS HistoryNCBI Gene:401115Re-query CCDS DB by CCDS ID:47000.2See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 47000.1
The coding region has been updated to shorten the N-terminus to one that is more supported by the available transcript and conservation data. The updated representation includes a predicted N-terminal signal peptide.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 47000.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409860.1 ENSP00000386528.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409860.1Link to Ensembl Protein Viewer:ENSP00000386528.1Re-query CCDS DB by Nucleotide ID:ENST00000409860Re-query CCDS DB by Protein ID:ENSP00000386528
Original member Current member EBI ENST00000409248.10 ENSP00000386807.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000409248.10Link to Ensembl Protein Viewer:ENSP00000386807.5Re-query CCDS DB by Nucleotide ID:ENST00000409248Re-query CCDS DB by Protein ID:ENSP00000386807
Original member Current member NCBI NM_001141936.3 NP_001135408.3 Accepted alive Link to Nucleotide Sequence:NM_001141936.3Link to Protein Sequence:NP_001135408.3Re-query CCDS DB by Nucleotide ID:NM_001141936Re-query CCDS DB by Protein ID:NP_001135408Link to BLAST:NP_001135408.3
Original member Current member NCBI NM_001168243.4 NP_001161715.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001168243.4Link to Protein Sequence:NP_001161715.3Re-query CCDS DB by Nucleotide ID:NM_001168243Re-query CCDS DB by Protein ID:NP_001161715Link to BLAST:NP_001161715.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135408.3 95 Q5BLP8-1 95 100% 0 0
NP_001161715.3 95 Q5BLP8-1 95 100% 0 0

Chromosomal Locations for CCDS 47000.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 2042352 2042484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2042736 2042824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 2043861 2043926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (288 nt):
ATGGCCCCCCCGCCCGCGTGCCGGTCCCCGATGTCACCGCCGCCGCCGCCGCTGCTGCTGCTGCTGCTGA
GTCTGGCGCTGCTGGGCGCCCGGGCCCGCGCCGAGCCCGCCGGGAGTGCCGTCCCCGCGCAGAGCCGCCC
ATGCGTGGACTGCCACGCCTTCGAGTTCATGCAGCGCGCCCTGCAGGACCTGCGGAAGACAGCCTGCAGC
CTGGACGCGCGGACGGAGACCCTACTGCTGCAGGCAGAGCGCCGTGCCCTGTGTGCCTGCTGGCCAGCGG
GGCACTGA

Translation (95 aa):
MAPPPACRSPMSPPPPPLLLLLLSLALLGARARAEPAGSAVPAQSRPCVDCHAFEFMQRALQDLRKTACS
LDARTETLLLQAERRALCACWPAGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH