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Report for CCDS34170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34170.1 Public Homo sapiens 5 RGS7BP 24 110 108 CCDS HistoryNCBI Gene:401190Re-query CCDS DB by CCDS ID:34170.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334025.3 ENSP00000334851.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334025.3Link to Ensembl Protein Viewer:ENSP00000334851.2Re-query CCDS DB by Nucleotide ID:ENST00000334025Re-query CCDS DB by Protein ID:ENSP00000334851
Original member Current member NCBI NM_001029875.3 NP_001025046.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001029875.3Link to Protein Sequence:NP_001025046.1Re-query CCDS DB by Nucleotide ID:NM_001029875Re-query CCDS DB by Protein ID:NP_001025046Link to BLAST:NP_001025046.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025046.1 257 Q6MZT1 257 100% 0 0

Chromosomal Locations for CCDS 34170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64506625 64506789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64507711 64507877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64575774 64575904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64594710 64594857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64598365 64598435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64609161 64609252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGAGTTCTGCACCGAATGGGCGCAAAAAGCGCCCCAGCCGGTCCACCCGCTCCTCGATCTTCCAGATCA
GCAAGCCCCCGCTGCAGAGCGGAGATTGGGAGCGCAGGGGCAGCGGCTCCGAGAGCGCCCACAAAACCCA
ACGAGCCCTGGACGACTGCAAGATGCTTGTCCAAGAGTTCAACACACAAGTGGCCCTGTACCGAGAGCTG
GTCATTTCTATTGGGGATGTCTCGGTCAGCTGCCCCTCACTCCGGGCGGAAATGCACAAGACAAGAACCA
AAGGCTGTGAAATGGCCCGTCAGGCACACCAAAAATTGGCTGCCATCTCAGGCCCGGAAGATGGTGAGAT
CCATCCAGAAATCTGTCGGCTTTACATCCAGCTGCAGTGCTGCTTAGAAATGTATACCACAGAGATGCTA
AAATCCATATGTCTGCTGGGGTCTCTTCAGTTTCATCGAAAAGGAAAGGAACCTGGCGGGGGAACCAAGA
GTTTGGATTGCAAAATTGAGGAGAGTGCTGAAACACCTGCCCTAGAAGACTCCTCATCATCCCCCGTAGA
TAGTCAGCAACATTCCTGGCAGGTTTCCACAGACATTGAGAACACTGAAAGAGACATGAGAGAAATGAAA
AACCTTTTAAGCAAACTCAGGGAAACTATGCCTTTACCATTGAAAAATCAAGATGACAGCAGCCTTCTGA
ATCTAACTCCCTACCCCCTGGTGAGAAGACGGAAGAGAAGGTTCTTTGGGCTGTGTTGTCTCATCTCAAG
CTAG

Translation (257 aa):
MSSAPNGRKKRPSRSTRSSIFQISKPPLQSGDWERRGSGSESAHKTQRALDDCKMLVQEFNTQVALYREL
VISIGDVSVSCPSLRAEMHKTRTKGCEMARQAHQKLAAISGPEDGEIHPEICRLYIQLQCCLEMYTTEML
KSICLLGSLQFHRKGKEPGGGTKSLDCKIEESAETPALEDSSSSPVDSQQHSWQVSTDIENTERDMREMK
NLLSKLRETMPLPLKNQDDSSLLNLTPYPLVRRRKRRFFGLCCLISS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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