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Report for CCDS34411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34411.1 Public Homo sapiens 6 SAPCD1 24 110 108 CCDS HistoryNCBI Gene:401251Re-query CCDS DB by CCDS ID:34411.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34411.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415669.4 ENSP00000411948.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000415669.4Link to Ensembl Protein Viewer:ENSP00000411948.2Re-query CCDS DB by Nucleotide ID:ENST00000415669Re-query CCDS DB by Protein ID:ENSP00000411948
Original member Current member NCBI NM_001039651.2 NP_001034740.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039651.2Link to Protein Sequence:NP_001034740.1Re-query CCDS DB by Nucleotide ID:NM_001039651Re-query CCDS DB by Protein ID:NP_001034740Link to BLAST:NP_001034740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034740.1 178 Q5SSQ6-2 178 100% 0 0

Chromosomal Locations for CCDS 34411.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31763055 31763168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31763415 31763555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31764064 31764159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31764266 31764355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31764436 31764531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGGGGAGCCAGGGCTCTGGCGGGGTGCCCTTGGTGCAGGCTCCCTACACAGTCCTGCTGCTGCCGCTGG
GGACAAGCCGCCAAGACCCAGGGGCCCAGAGCTTCTTCCTTTGGCTACGCAGGATGCAGGCTCTGGAGAG
AGAACAGGATGCCCTGTGGCAGGGTCTGGAGCTGCTACAGCATGGCCAGGCCTGGTTTGAAGACCATCTG
AGGGAGGCACAGCGACAGCAGCTGCATCTAGGGGCCCTTGGTGAGAATTTTCTAACAGATTTACACTCAG
AGCCTGGTCGCCCCCCGTTAGCCCAGATTCAAAAGGTGAACATCTGTTTGCAGAATCTGATTCATGAGAA
GTTCTCCCCAAGTCCACTGAACAAGGCTAGTTCCTGCACCACCCAGGATTCAAAGGAAAGACGAAGGGAG
CAGAACTTGTGGCAGCAACAGGAGTTGTCAAGGCAGCAGAAAGGAGTCACCCAGCCAAAGGAGGAGATGG
CTCAGCGGGGCTGCACCAAGGGGCCAAGAGGCCCTACCCGTGTCTAA

Translation (178 aa):
MGSQGSGGVPLVQAPYTVLLLPLGTSRQDPGAQSFFLWLRRMQALEREQDALWQGLELLQHGQAWFEDHL
REAQRQQLHLGALGENFLTDLHSEPGRPPLAQIQKVNICLQNLIHEKFSPSPLNKASSCTTQDSKERRRE
QNLWQQQELSRQQKGVTQPKEEMAQRGCTKGPRGPTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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