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Report for CCDS3371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3371.1 Public Homo sapiens 4 LRPAP1 24 110 108 CCDS HistoryNCBI Gene:4043Re-query CCDS DB by CCDS ID:3371.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3371.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000650182.1 ENSP00000497444.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000650182.1Link to Ensembl Protein Viewer:ENSP00000497444.1Re-query CCDS DB by Nucleotide ID:ENST00000650182Re-query CCDS DB by Protein ID:ENSP00000497444
Original member Current member NCBI NM_002337.4 NP_002328.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002337.4Link to Protein Sequence:NP_002328.1Re-query CCDS DB by Nucleotide ID:NM_002337Re-query CCDS DB by Protein ID:NP_002328Link to BLAST:NP_002328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002328.1 357 P30533 357 100% 0 0

Chromosomal Locations for CCDS 3371.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 3512974 3513036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3514752 3514928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3516116 3516198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3518034 3518192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3518871 3518991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3520072 3520193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3524907 3525051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 3532209 3532412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGCGCCGCGGAGGGTCAGGTCGTTTCTGCGCGGGCTCCCGGCGCTGCTACTGCTGCTGCTCTTCCTCG
GGCCCTGGCCCGCTGCGAGCCACGGCGGCAAGTACTCGCGGGAGAAGAACCAGCCCAAGCCGTCCCCGAA
ACGCGAGTCCGGAGAGGAGTTCCGCATGGAGAAGTTGAACCAGCTGTGGGAGAAGGCCCAGCGACTGCAT
CTTCCTCCCGTGAGGCTGGCCGAGCTCCACGCTGATCTGAAGATACAGGAGAGGGACGAACTCGCCTGGA
AGAAACTAAAGCTTGACGGCTTGGACGAAGATGGGGAGAAGGAAGCGAGACTCATACGCAACCTCAATGT
CATCTTGGCCAAGTATGGTCTGGACGGAAAGAAGGACGCTCGGCAGGTGACCAGCAACTCCCTCAGTGGC
ACCCAGGAAGACGGGCTGGATGACCCCAGGCTGGAAAAGCTGTGGCACAAGGCGAAGACCTCTGGGAAAT
TCTCCGGCGAAGAACTGGACAAGCTCTGGCGGGAGTTCCTGCATCACAAAGAGAAAGTTCACGAGTACAA
CGTCCTGCTGGAGACCCTGAGCAGGACCGAAGAAATCCACGAGAACGTCATTAGCCCCTCGGACCTGAGC
GACATCAAGGGCAGCGTCCTGCACAGCAGGCACACGGAGCTGAAGGAGAAGCTGCGCAGCATCAACCAGG
GCCTGGACCGCCTGCGCAGGGTCAGCCACCAGGGCTACAGCACTGAGGCTGAGTTCGAGGAGCCCAGGGT
GATTGACCTGTGGGACCTGGCGCAGTCCGCCAACCTCACGGACAAGGAGCTGGAGGCGTTCCGGGAGGAG
CTCAAGCACTTCGAAGCCAAAATCGAGAAGCACAACCACTACCAGAAGCAGCTGGAGATTGCGCACGAGA
AGCTGAGGCACGCAGAGAGCGTGGGCGACGGCGAGCGTGTGAGCCGCAGCCGCGAGAAGCACGCCCTGCT
GGAGGGGCGGACCAAGGAGCTGGGCTACACGGTGAAGAAGCATCTGCAGGACCTGTCCGGCAGGATCTCC
AGAGCTCGGCACAACGAACTCTGA

Translation (357 aa):
MAPRRVRSFLRGLPALLLLLLFLGPWPAASHGGKYSREKNQPKPSPKRESGEEFRMEKLNQLWEKAQRLH
LPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDARQVTSNSLSG
TQEDGLDDPRLEKLWHKAKTSGKFSGEELDKLWREFLHHKEKVHEYNVLLETLSRTEEIHENVISPSDLS
DIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTEAEFEEPRVIDLWDLAQSANLTDKELEAFREE
LKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGRIS
RARHNEL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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