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Report for CCDS18679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18679.1 Public Mus musculus 4 Ak2 23 108 98 CCDS HistoryNCBI Gene:11637Re-query CCDS DB by CCDS ID:18679.1Re-query CCDS DB by GeneID:11637See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102604.10 ENSMUSP00000099664.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102604.10Link to Ensembl Protein Viewer:ENSMUSP00000099664.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102604Re-query CCDS DB by Protein ID:ENSMUSP00000099664
Original member Current member NCBI NM_016895.4 NP_058591.2 Accepted alive Link to Nucleotide Sequence:NM_016895.4Link to Protein Sequence:NP_058591.2Re-query CCDS DB by Nucleotide ID:NM_016895Re-query CCDS DB by Protein ID:NP_058591Link to BLAST:NP_058591.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058591.2 232 Q9WTP6-2 232 100% 0 0

Chromosomal Locations for CCDS 18679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 128993344 128993436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128999134 128999259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129002151 129002261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129002374 129002468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129007713 129007785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129008034 129008229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129010563 129010567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGCTCCCAACGTGTTGGCTTCCGAACCGGAGATTCCGAAGGGCATCCGGGCCGTGTTGCTGGGGCCGC
CCGGGGCTGGCAAGGGGACGCAGGCACCCAAACTGGCTGAAAACTTTTGTGTCTGTCATTTGGCCACCGG
GGACATGCTGAGAGCCATGGTAGCTTCTGGCTCAGAGCTAGGAAAAAAGCTGAAGGCGACAATGGATGCA
GGGAAACTGGTGAGTGACGAAATGGTTGTGGAGCTAATTGAGAAGAATTTGGAGACTCCTTCGTGCAAAA
ATGGCTTTCTTCTAGATGGCTTCCCTCGGACTGTGAGGCAGGCTGAAATGCTTGATGACCTCATGGAGAA
GAGGAAAGAGAAGCTCGATTCAGTCATTGAGTTCAGCATCCAAGACTCGCTGCTGATCCGGAGGATCACT
GGGAGGCTGATTCACCCCAAGAGTGGCCGGTCCTACCATGAGGAATTCAACCCTCCAAAGGAGCCCATGA
AAGATGATATCACTGGGGAGCCCCTGATCCGCAGGTCAGATGACAACGAGAAAGCCTTGAAGACCCGCCT
GGAGGCCTACCACACTCAGACCACTCCGCTCGTGGAGTACTACAGGAAACGCGGCATTCACTGCGCCATC
GATGCGTCCCAGACCCCTGACATCGTGTTTGCGAGCATCCTGGCAGCCTTCTCCAAAGCCACATCCTAG

Translation (232 aa):
MAPNVLASEPEIPKGIRAVLLGPPGAGKGTQAPKLAENFCVCHLATGDMLRAMVASGSELGKKLKATMDA
GKLVSDEMVVELIEKNLETPSCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIQDSLLIRRIT
GRLIHPKSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNEKALKTRLEAYHTQTTPLVEYYRKRGIHCAI
DASQTPDIVFASILAAFSKATS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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