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Report for CCDS27483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27483.1 Public Mus musculus 15 Zhx2 23 108 98 CCDS HistoryNCBI Gene:387609Re-query CCDS DB by CCDS ID:27483.1Re-query CCDS DB by GeneID:387609See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096430.10 ENSMUSP00000094164.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096430.10Link to Ensembl Protein Viewer:ENSMUSP00000094164.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000096430Re-query CCDS DB by Protein ID:ENSMUSP00000094164
Original member Current member NCBI NM_199449.2 NP_955520.1 Accepted alive Link to Nucleotide Sequence:NM_199449.2Link to Protein Sequence:NP_955520.1Re-query CCDS DB by Nucleotide ID:NM_199449Re-query CCDS DB by Protein ID:NP_955520Link to BLAST:NP_955520.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_955520.1 836 Q8C0C0 836 100% 0 0

Chromosomal Locations for CCDS 27483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57821237 57823747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2511 nt):
ATGGCAAGCAAACGGAAATCTACAACTCCCTGCATGGTTCGGACATCACAGGTACTGGAACAAGATATGC
TGGAGGAGGCAGACAGGGCCAAAGACAAAGGAGCGGGCATGCCACAGTCCGATGTGACAAAGGACAGCTG
GGCAGCGGAACCTGAACATTCGTCCAAAGAAACCGAAGTGGTTGAGGTGAAATCTATGGGGGAGAACCTG
TCCAAAAAACTACAGGGCGGTTATGAGTGCAAATACTGCCCTTATTCCACGCAAAATCTGAATGAGTTCA
CAGAACACGTGGACATGCAACATCCTAACGTGATTCTCAACCCCCTCTACGTATGTGCCGAATGTAACTT
CACAACCAAAAAGTACGACTCCTTGTCTGACCACAACTCCAAGTTCCATCCGGGGGAGACCAACTTCAAG
CTGAAATTAATCAAGCGCAATAATCAGACGGTTCTAGAACAGTCCATCGAAGCCACCAACCACGTCGTGC
CCATCACTGCCAGTGGTCCTGGAAGTAGTGATAACGACCCTGGGGTCTCGGTAGGAAAAACCCCCATGAC
AAAGACAGGAAAGCTGAAGGCAGATGCCAAGAAAGTGCCCAAGAAGCCTGATGAGGCTGCCCCAGAAAAC
CACATGGAAGGGACCGCCCGCCTGGTGACAGACACAGCTGAGATCCTCGCCAGACTTGGTAGCGTGGAGC
TCCTTCAAGATTCACTGGGACATGTCATGCCTTCCGTACAGCTGCCACCAAATATCAACCTTGTCCCCAA
GGTCCCCGTCCCGCTGAATACTACCAAATACAACTCTGCCCTGGACACAAATGCTACCATGATCAACTCC
TTCAACAAGTTCCCTTACCCCACCCAGGCTGAGCTCTCCTGGCTGACGGCGGCCTCCAAACACCCAGAGG
AGCACATCCGAATCTGGTTTGCCACCCAGCGTTTAAAGCACGGTATCAGCTGGTCCCCAGAGGAGGTGGA
GGAGGCCCGGAAGAAGATGTTTAACGGCACGATTCAGTCAGTACCCCCGACTATCACTGTGCTTCCTGCT
CAGCTGACTCCCACAAAAGTGTCACAGCCCATCCTCCAGACAGCCCTACCATGCCAGATCCTTGGCCAGC
CCAGCCTGGTGCTGACTCAAGTGACAAGCGGGTCAACAACTGTCTCCTGCTCTCCCATCACACTTGCGGT
GGCTGGGGTGACCAATCATGGCCAGAAGAGACCTCTGGTGACTCCTCAAGCTGCCCCTGAGCCGAAGCGT
CCACACATTGCCCAGGTGCCAGAACCTCCACCCAAGGTGGCCAATACCCCGCTCACCCCAGCTAGCGACC
GCAAGAAGACCAAGCTACAGATAGCTCACCTCAAGGCAAGCTTCTTACAGAGCCAGTTCCCTGACGATGC
TGAGGTCTACCGGCTCATTGAGGTGACAGGCCTTGCGAGGAGTGAGATCAAGAAGTGGTTCAGTGACCAC
CGCTACCGGTGTCAGAGGGGCATCGTCCACATCACCAGCGAATCCCTTGCCAAAGACCAGATGGCCATTA
CTGGCACCCGGCACGGCCGCACCTACCATGTATACCCAGACTTTGCCCCGCAGAAGTTCAAAGAGAAAAG
CCAAGGACAGTTGAAAACCCTGGAAGACAGCTTTCTAAAAAGCTCCTTTCCCACCCAGGCAGAAGTGGAA
CGGCTGAGGGTGGAGACCAAGCTGAGCAGGAGGGAAATCGACTCCTGGTTCTCAGAGAGGCGGAAGCTTC
GAGACAGCATGGAGCAGGCTGTGTTGGATTCCATGGGGTCTGGCAAAAAGGGCTCAGACGCGGTAGCCCC
CAATGGTGCTCTATCCCGACTTGATCAGCTCTCTGGTGCCCAGTTAGCTGGTTCTTTGCCCAGTCCTTCA
TCAGCAATTGTACAAAATCAAGAACAGGTTCACCTGCTCAGGAGCACTTTTGCAAGAACCCAGTGGCCCA
CTCCTCAGGAGTACGATCAGTTAGCTGCCAAGACCGGCCTGGTCCGAACTGAGATTGTGCGCTGGTTCAA
GGAGAACAGATGCTTACTAAAAACTGGAACGTTGAGCTGGCTGGAGCAGTACCAGCGGCATCACATGTCA
GATGACCGTGGTCGTGATGCCGTATCAAGAAAGGTGGCAAAACAAGTTGCTGAGAGCCCAAAGAATGGAA
GCGAGGCGGCACATCAGTATGCCAAGGACCCCAAAGCACTCAGCGAGGAGGACTCCGAGAAGCTGGTCCC
GAGGATGAAAGTGGGTGGTGATCCAACCAAGGACTGTTTGGCAGGCAAGCCCTCAGAGGCCACCTCAGAC
AGATCAGAGGGCAGCCGAGATGGCCAGGGCAGTGAGGAGAACGAGGAGTCAGGCATCGTGGACTTTGTGG
AGGTGACAGTTGGTGAGGAGGACGCCATCTCAGAGAAGTGGGGTAGCTGGAGCCGGAGAGTAGCAGAAGG
CACAGTGGAGAGGGCAGACTCCGACTCCGACAGCACCCCTGCAGAGGCCGGCCAAGCCTAG

Translation (836 aa):
MASKRKSTTPCMVRTSQVLEQDMLEEADRAKDKGAGMPQSDVTKDSWAAEPEHSSKETEVVEVKSMGENL
SKKLQGGYECKYCPYSTQNLNEFTEHVDMQHPNVILNPLYVCAECNFTTKKYDSLSDHNSKFHPGETNFK
LKLIKRNNQTVLEQSIEATNHVVPITASGPGSSDNDPGVSVGKTPMTKTGKLKADAKKVPKKPDEAAPEN
HMEGTARLVTDTAEILARLGSVELLQDSLGHVMPSVQLPPNINLVPKVPVPLNTTKYNSALDTNATMINS
FNKFPYPTQAELSWLTAASKHPEEHIRIWFATQRLKHGISWSPEEVEEARKKMFNGTIQSVPPTITVLPA
QLTPTKVSQPILQTALPCQILGQPSLVLTQVTSGSTTVSCSPITLAVAGVTNHGQKRPLVTPQAAPEPKR
PHIAQVPEPPPKVANTPLTPASDRKKTKLQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDH
RYRCQRGIVHITSESLAKDQMAITGTRHGRTYHVYPDFAPQKFKEKSQGQLKTLEDSFLKSSFPTQAEVE
RLRVETKLSRREIDSWFSERRKLRDSMEQAVLDSMGSGKKGSDAVAPNGALSRLDQLSGAQLAGSLPSPS
SAIVQNQEQVHLLRSTFARTQWPTPQEYDQLAAKTGLVRTEIVRWFKENRCLLKTGTLSWLEQYQRHHMS
DDRGRDAVSRKVAKQVAESPKNGSEAAHQYAKDPKALSEEDSEKLVPRMKVGGDPTKDCLAGKPSEATSD
RSEGSRDGQGSEENEESGIVDFVEVTVGEEDAISEKWGSWSRRVAEGTVERADSDSDSTPAEAGQA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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