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Report for CCDS40806.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40806.1 Public Mus musculus 9 Cx3cr1 23 108 98 CCDS HistoryNCBI Gene:13051Re-query CCDS DB by CCDS ID:40806.1Re-query CCDS DB by GeneID:13051See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40806.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064165.4 ENSMUSP00000063986.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064165.4Link to Ensembl Protein Viewer:ENSMUSP00000063986.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000064165Re-query CCDS DB by Protein ID:ENSMUSP00000063986
Original member Current member EBI ENSMUST00000177637.1 ENSMUSP00000136413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177637.1Link to Ensembl Protein Viewer:ENSMUSP00000136413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177637Re-query CCDS DB by Protein ID:ENSMUSP00000136413
Original member Current member EBI ENSMUST00000215016.1 ENSMUSP00000150463.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215016.1Link to Ensembl Protein Viewer:ENSMUSP00000150463.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215016Re-query CCDS DB by Protein ID:ENSMUSP00000150463
Original member Current member NCBI NM_009987.4 NP_034117.3 Accepted alive Link to Nucleotide Sequence:NM_009987.4Link to Protein Sequence:NP_034117.3Re-query CCDS DB by Nucleotide ID:NM_009987Re-query CCDS DB by Protein ID:NP_034117Link to BLAST:NP_034117.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034117.3 354 Q9Z0D9 354 100% 0 0

Chromosomal Locations for CCDS 40806.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 120051270 120052334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGTCCACCTCCTTCCCTGAACTGGATCTAGAGAATTTTGAGTATGACGATTCTGCTGAGGCCTGTTATT
TGGGCGACATTGTGGCCTTTGGAACCATCTTCCTGTCCGTCTTCTACGCCCTCGTCTTCACGTTCGGTCT
GGTGGGAAATCTGTTGGTGGTCCTCGCTCTCACCAACAGCCGGAAGCCCAAGAGCATCACTGACATCTAC
CTCCTGAACCTGGCCTTGAGCGACCTGCTCTTTGTGGCCACCTTGCCCTTCTGGACTCACTACCTCATCA
GCCATGAGGGCCTCCACAATGCCATGTGCAAGCTCACGACTGCCTTCTTCTTCATTGGCTTCTTTGGGGG
CATATTCTTCATCACCGTCATCAGCATCGACCGGTACCTTGCCATCGTCCTGGCCGCCAACTCCATGAAC
AACCGGACAGTGCAGCACGGTGTCACCATTAGTCTGGGCGTCTGGGCGGCGGCCATCTTAGTGGCGTCAC
CCCAGTTCATGTTCACAAAGAGAAAGGACAACGAGTGTCTGGGTGACTACCCCGAGGTCCTGCAGGAAAT
GTGGCCCGTGCTCCGCAACTCGGAAGTCAACATCCTGGGCTTCGCCCTGCCCTTGCTTATCATGAGCTTT
TGCTACTTCCGCATCATCCAGACGCTGTTTTCCTGCAAGAATCGCAAGAAGGCCAGAGCCGTCAGACTCA
TCCTCCTGGTGGTCTTTGCCTTCTTCCTCTTCTGGACACCATACAACATCATGATTTTCCTGGAGACTCT
CAAGTTCTACAACTTCTTCCCCAGTTGTGACATGAAGAGGGACCTGAGGTTGGCCCTCAGTGTGACGGAG
ACAGTGGCGTTCAGCCACTGTTGCCTCAACCCCTTTATCTACGCCTTTGCCGGGGAAAAGTTCAGAAGAT
ACCTGGGACACCTGTATAGGAAGTGCCTGGCCGTCCTGTGCGGTCATCCTGTCCACACCGGCTTCTCGCC
AGAGTCCCAGAGGAGCAGGCAGGACAGCATTCTGAGCAGTTTCACTCACTACACAAGCGAGGGAGATGGG
TCTCTCCTGCTCTGA

Translation (354 aa):
MSTSFPELDLENFEYDDSAEACYLGDIVAFGTIFLSVFYALVFTFGLVGNLLVVLALTNSRKPKSITDIY
LLNLALSDLLFVATLPFWTHYLISHEGLHNAMCKLTTAFFFIGFFGGIFFITVISIDRYLAIVLAANSMN
NRTVQHGVTISLGVWAAAILVASPQFMFTKRKDNECLGDYPEVLQEMWPVLRNSEVNILGFALPLLIMSF
CYFRIIQTLFSCKNRKKARAVRLILLVVFAFFLFWTPYNIMIFLETLKFYNFFPSCDMKRDLRLALSVTE
TVAFSHCCLNPFIYAFAGEKFRRYLGHLYRKCLAVLCGHPVHTGFSPESQRSRQDSILSSFTHYTSEGDG
SLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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