NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29328.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29328.1 Public Mus musculus 18 Mc2r 23 108 98 CCDS HistoryNCBI Gene:17200Re-query CCDS DB by CCDS ID:29328.1Re-query CCDS DB by GeneID:17200See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29328.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052347.7 ENSMUSP00000058691.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052347.7Link to Ensembl Protein Viewer:ENSMUSP00000058691.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052347Re-query CCDS DB by Protein ID:ENSMUSP00000058691
Original member Current member NCBI NM_001271716.1 NP_001258645.1 Accepted alive Link to Nucleotide Sequence:NM_001271716.1Link to Protein Sequence:NP_001258645.1Re-query CCDS DB by Nucleotide ID:NM_001271716Re-query CCDS DB by Protein ID:NP_001258645Link to BLAST:NP_001258645.1
Original member Current member NCBI NM_001271717.1 NP_001258646.1 Accepted alive Link to Nucleotide Sequence:NM_001271717.1Link to Protein Sequence:NP_001258646.1Re-query CCDS DB by Nucleotide ID:NM_001271717Re-query CCDS DB by Protein ID:NP_001258646Link to BLAST:NP_001258646.1
Original member Current member NCBI NM_001301372.1 NP_001288301.1 Accepted alive Link to Nucleotide Sequence:NM_001301372.1Link to Protein Sequence:NP_001288301.1Re-query CCDS DB by Nucleotide ID:NM_001301372Re-query CCDS DB by Protein ID:NP_001288301Link to BLAST:NP_001288301.1
Original member Current member NCBI NM_008560.3 NP_032586.1 Accepted alive Link to Nucleotide Sequence:NM_008560.3Link to Protein Sequence:NP_032586.1Re-query CCDS DB by Nucleotide ID:NM_008560Re-query CCDS DB by Protein ID:NP_032586Link to BLAST:NP_032586.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258645.1 296 Q64326 296 100% 0 0
NP_001258646.1 296 Q64326 296 100% 0 0
NP_001288301.1 296 Q64326 296 100% 0 0
NP_032586.1 296 Q64326 296 100% 0 0

Chromosomal Locations for CCDS 29328.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 68407330 68408220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGAAGCATATTATCAATTCGTATGAACACACCAATGACACCGCAAGAAATAACTCCGATTGTCCTGATG
TAGTTTTGCCAGAAGAGATATTTTTCACAATCTCTGTCATTGGCATATTGGAGAACTTGATTGTCCTCCT
GGCTGTGATCAAAAATAAAAATCTCCAGTCCCCCATGTATTTTTTCATCTGCAGTTTGGCCATTTCTGAC
ATGTTGGGCAGTCTGTATAAGATCTTGGAAAACATCCTGATCATGTTCAGAAACATGGGTTATCTTAAGC
CTCGTGGCAGTTTTGAAAGCACAGCAGATGACATCATTGACTGCATGTTCATCCTCTCTTTGCTGGGCTC
TATCTTCAGCCTGTCTGTCATTGCAGCTGACCGTTACATCACCATCTTCCATGCCCTGCAATACCATAGC
ATTGTGACCATGCGCCGCACCATCATCACCCTAACAATTATCTGGATGTTCTGCACAGGGAGCGGCATCA
CCATGGTGATCTTCTCCCACCACATCCCCACAGTGCTCACCTTCACATCGCTGTTCCCTTTGATGCTGGT
TTTTATCCTGTGTCTCTACATCCACATGTTCTTACTTGCCCGCTCCCATGCTAGGAAGATCTCTACCCTT
CCTAGAACCAACATGAAGGGTGCCATGACACTAACCATCCTTCTTGGAGTCTTCATCTTCTGTTGGGCCC
CCTTTGTGCTCCATGTTCTCTTAATGACCTTCTGCCCAAATAACCCTTACTGTGTTTGCTACATGTCTCT
CTTCCAGGTCAATGGCATGTTGATCATGTGCAATGCAGTTATTGACCCCTTTATATATGCCTTTCGGAGC
CCAGAGCTCAGAGATGCATTCAAAAGGATGCTCTTCTGCAACCGGTATTAG

Translation (296 aa):
MKHIINSYEHTNDTARNNSDCPDVVLPEEIFFTISVIGILENLIVLLAVIKNKNLQSPMYFFICSLAISD
MLGSLYKILENILIMFRNMGYLKPRGSFESTADDIIDCMFILSLLGSIFSLSVIAADRYITIFHALQYHS
IVTMRRTIITLTIIWMFCTGSGITMVIFSHHIPTVLTFTSLFPLMLVFILCLYIHMFLLARSHARKISTL
PRTNMKGAMTLTILLGVFIFCWAPFVLHVLLMTFCPNNPYCVCYMSLFQVNGMLIMCNAVIDPFIYAFRS
PELRDAFKRMLFCNRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH