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Report for CCDS46252.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46252.1 Public Homo sapiens 2 CAPN13 24 110 108 CCDS HistoryNCBI Gene:92291Re-query CCDS DB by CCDS ID:46252.1Re-query CCDS DB by GeneID:92291See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46252.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295055.12 ENSP00000295055.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295055.12Link to Ensembl Protein Viewer:ENSP00000295055.8Re-query CCDS DB by Nucleotide ID:ENST00000295055Re-query CCDS DB by Protein ID:ENSP00000295055
Original member Current member NCBI NM_144575.3 NP_653176.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144575.3Link to Protein Sequence:NP_653176.2Re-query CCDS DB by Nucleotide ID:NM_144575Re-query CCDS DB by Protein ID:NP_653176Link to BLAST:NP_653176.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653176.2 669 Q6MZZ7-1 669 100% 0 0

Chromosomal Locations for CCDS 46252.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30730760 30730786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30731344 30731399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30732438 30732566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30734449 30734524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30736503 30736571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30738235 30738293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30738400 30738457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30741908 30741964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30742326 30742359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30743383 30743579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30745723 30745734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30751103 30751251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30753053 30753198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30754290 30754364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30758046 30758137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30763082 30763156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30764132 30764306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30770313 30770449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30775930 30776045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30777567 30777639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30787128 30787325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGGCGTATTACCAGGAGCCTTCAGTGGAGACCTCCATCATCAAGTTCAAAGACCAGGACTTTACCACCT
TGCGGGATCACTGCCTGAGCATGGGCCGGACGTTTAAGGATGAGACATTCCCTGCAGCAGATTCTTCCAT
AGGCCAGAAGCTGCTCCAGGAAAAACGCCTCTCCAATGTGATATGGAAGCGGCCACAGGATCTACCAGGG
GGTCCTCCTCACTTCATCCTGGATGATATAAGCAGATTTGACATCCAACAAGGAGGCGCAGCTGACTGCT
GGTTCCTGGCAGCACTGGGATCCTTGACTCAGAACCCACAGTACAGGCAGAAGATCCTGATGGTCCAAAG
CTTTTCACACCAGTATGCTGGCATTTTCCGTTTCCGGTTCTGGCAATGTGGCCAGTGGGTGGAAGTGGTG
ATTGATGACCGCCTACCTGTCCAGGGAGATAAATGCCTCTTTGTGCGTCCTCGCCACCAAAACCAAGAGT
TCTGGCCCTGCCTGCTGGAGAAGGCCTATGCCAAGCTGCTCGGATCCTATTCCGATCTGCACTATGGCTT
CCTCGAGGATGCCCTGGTGGACCTCACAGGAGGCGTGATCACCAACATCCATCTGCACTCTTCCCCTGTG
GACCTGGTGAAGGCAGTGAAGACAGCGACCAAGGCAGGCTCCCTGATAACCTGTGCCACTCCAAGTGGGC
CAACAGATACAGCACAGGCGATGGAGAATGGGCTGGTGAGTCTCCATGCCTACACTGTGACTGGGGCTGA
GCAGATTCAATACCGAAGGGGCTGGGAAGAAATTATCTCCCTGTGGAACCCCTGGGGCTGGGGCGAGGCC
GAATGGAGAGGGCGCTGGAGTGATGGGTCTCAGGAGTGGGAGGAAACCTGTGATCCGCGGAAAAGCCAGC
TACATAAGAAACGGGAAGATGGCGAGTTTTGGATGTCGTGTCAAGATTTCCAACAGAAATTCATCGCCAT
GTTTATATGTAGCGAAATTCCAATTACCCTGGACCATGGAAACACACTCCACGAAGGATGGTCCCAAATA
ATGTTTAGGAAGCAAGTGATTCTAGGAAACACTGCAGGAGGACCTCGGAATGATGCTCAATTCAACTTCT
CTGTGCAAGAGCCAATGGAAGGCACCAATGTTGTCGTGTGCGTCACAGTTGCTGTCACACCATCAAATTT
GAAAGCAGAAGATGCAAAATTTCCACTCGATTTCCAAGTGATTCTGGCTGGCTCACAGCGGTTCCGGGAG
AAATTTCCACCCGTGTTTTTTTCCTCGTTCAGAAACACTGTCCAAAGCTCAAATAATAAATTCCGCCGCA
ACTTCACCATGACTTACCATCTGAGCCCTGGGAACTATGTTGTGGTTGCACAGACACGGAGAAAATCAGC
GGAGTTCTTGCTCCGAATCTTCCTGAAAATGCCAGACAGTGACAGGCACCTGAGCAGCCATTTCAACCTC
AGAATGAAGGGAAGCCCTTCAGAACATGGCTCCCAACAAAGCATTTTCAACAGATATGCTCAGCAGAGGC
TGGACATTGATGCCACCCAGCTTCAGGGCCTTCTCAACCAGGAGCTTCTAACAGGACCTCCAGGGGACAT
GTTCTCCTTAGATGAGTGCCGCAGCTTGGTGGCTCTGATGGAACTGAAAGTGAATGGGCGGCTAGACCAA
GAGGAGTTTGCGCGACTGTGGAAGCGCCTTGTTCACTACCAGCATGTTTTCCAGAAGGTTCAGACAAGCC
CTGGAGTCCTCCTGAGCTCGGACTTGTGGAAGGCCATAGAGAATACAGACTTCCTCAGAGGGATCTTCAT
CAGCCGTGAGCTGCTGCATCTGGTGACCCTCAGGTACAGCGACAGCGTCGGCAGGGTCAGCTTCCCCAGC
CTGGTCTGCTTCCTGATGCGGCTTGAAGCCATGGCAAAGACCTTCCGCAACCTCTCTAAGGATGGAAAAG
GACTCTACCTGACAGAAATGGAGTGGATGAGCCTGGTCATGTACAACTGA

Translation (669 aa):
MAYYQEPSVETSIIKFKDQDFTTLRDHCLSMGRTFKDETFPAADSSIGQKLLQEKRLSNVIWKRPQDLPG
GPPHFILDDISRFDIQQGGAADCWFLAALGSLTQNPQYRQKILMVQSFSHQYAGIFRFRFWQCGQWVEVV
IDDRLPVQGDKCLFVRPRHQNQEFWPCLLEKAYAKLLGSYSDLHYGFLEDALVDLTGGVITNIHLHSSPV
DLVKAVKTATKAGSLITCATPSGPTDTAQAMENGLVSLHAYTVTGAEQIQYRRGWEEIISLWNPWGWGEA
EWRGRWSDGSQEWEETCDPRKSQLHKKREDGEFWMSCQDFQQKFIAMFICSEIPITLDHGNTLHEGWSQI
MFRKQVILGNTAGGPRNDAQFNFSVQEPMEGTNVVVCVTVAVTPSNLKAEDAKFPLDFQVILAGSQRFRE
KFPPVFFSSFRNTVQSSNNKFRRNFTMTYHLSPGNYVVVAQTRRKSAEFLLRIFLKMPDSDRHLSSHFNL
RMKGSPSEHGSQQSIFNRYAQQRLDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQ
EEFARLWKRLVHYQHVFQKVQTSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRVSFPS
LVCFLMRLEAMAKTFRNLSKDGKGLYLTEMEWMSLVMYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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