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Report for CCDS11868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11868.1 Public Homo sapiens 18 MC5R 24 110 108 CCDS HistoryNCBI Gene:4161Re-query CCDS DB by CCDS ID:11868.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11868.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324750.5 ENSP00000318077.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324750.5Link to Ensembl Protein Viewer:ENSP00000318077.3Re-query CCDS DB by Nucleotide ID:ENST00000324750Re-query CCDS DB by Protein ID:ENSP00000318077
Original member Current member EBI ENST00000589410.2 ENSP00000468086.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000589410.2Link to Ensembl Protein Viewer:ENSP00000468086.2Re-query CCDS DB by Nucleotide ID:ENST00000589410Re-query CCDS DB by Protein ID:ENSP00000468086
Original member Current member NCBI NM_005913.3 NP_005904.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005913.3Link to Protein Sequence:NP_005904.1Re-query CCDS DB by Nucleotide ID:NM_005913Re-query CCDS DB by Protein ID:NP_005904Link to BLAST:NP_005904.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005904.1 325 P33032 325 100% 0 0

Chromosomal Locations for CCDS 11868.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 13825766 13826743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGAATTCCTCATTTCACCTGCATTTCTTGGATCTCAACCTGAATGCCACAGAGGGCAACCTTTCAGGAC
CCAATGTCAAAAACAAGTCTTCACCATGTGAAGACATGGGCATTGCTGTGGAGGTGTTTCTCACTCTGGG
TGTCATCAGCCTCTTGGAGAACATCTTGGTCATAGGGGCCATAGTGAAGAACAAAAACCTGCACTCCCCC
ATGTACTTCTTCGTGTGCAGCCTGGCAGTGGCGGACATGCTGGTGAGCATGTCCAGTGCCTGGGAGACCA
TCACCATCTACCTACTCAACAACAAGCACCTAGTGATAGCAGACGCCTTTGTGCGCCACATTGACAATGT
GTTTGACTCCATGATCTGCATTTCCGTGGTGGCATCCATGTGCAGCTTACTGGCCATTGCAGTGGATAGG
TACGTCACCATCTTCTACGCCCTGCGCTACCACCACATCATGACGGCGAGGCGCTCAGGGGCCATCATCG
CCGGCATCTGGGCTTTCTGCACGGGCTGCGGCATTGTCTTCATCCTGTACTCAGAATCCACCTACGTCAT
CCTGTGCCTCATCTCCATGTTCTTCGCTATGCTGTTCCTCCTGGTGTCTCTGTACATACACATGTTCCTC
CTGGCGCGGACTCACGTCAAGCGGATCGCGGCTCTGCCCGGGGCCAGCTCTGCGCGGCAGAGGACCAGCA
TGCAGGGCGCGGTCACCGTCACCATGCTGCTGGGCGTGTTTACCGTGTGCTGGGCCCCGTTCTTCCTTCA
TCTCACTTTAATGCTTTCTTGCCCTCAGAACCTCTACTGCTCTCGCTTCATGTCTCACTTCAATATGTAC
CTCATACTCATCATGTGTAATTCCGTGATGGACCCTCTCATATATGCCTTCCGCAGCCAAGAGATGCGGA
AGACCTTTAAGGAGATTATTTGCTGCCGTGGTTTCAGGATCGCCTGCAGCTTTCCCAGAAGGGATTAA

Translation (325 aa):
MNSSFHLHFLDLNLNATEGNLSGPNVKNKSSPCEDMGIAVEVFLTLGVISLLENILVIGAIVKNKNLHSP
MYFFVCSLAVADMLVSMSSAWETITIYLLNNKHLVIADAFVRHIDNVFDSMICISVVASMCSLLAIAVDR
YVTIFYALRYHHIMTARRSGAIIAGIWAFCTGCGIVFILYSESTYVILCLISMFFAMLFLLVSLYIHMFL
LARTHVKRIAALPGASSARQRTSMQGAVTVTMLLGVFTVCWAPFFLHLTLMLSCPQNLYCSRFMSHFNMY
LILIMCNSVMDPLIYAFRSQEMRKTFKEIICCRGFRIACSFPRRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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