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Report for CCDS71860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71860.1 Public Mus musculus 6 Bhlhe41 23 108 98 CCDS HistoryNCBI Gene:79362Re-query CCDS DB by CCDS ID:71860.1Re-query CCDS DB by GeneID:79362See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111703.1 ENSMUSP00000107332.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111703.1Link to Ensembl Protein Viewer:ENSMUSP00000107332.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111703Re-query CCDS DB by Protein ID:ENSMUSP00000107332
Original member Current member NCBI NM_001271768.1 NP_001258697.1 Accepted alive Link to Nucleotide Sequence:NM_001271768.1Link to Protein Sequence:NP_001258697.1Re-query CCDS DB by Nucleotide ID:NM_001271768Re-query CCDS DB by Protein ID:NP_001258697Link to BLAST:NP_001258697.1

Chromosomal Locations for CCDS 71860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 145863818 145863867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145864131 145864242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145864576 145864683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145864997 145865060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145865206 145865267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGGACGAAGGAATCCCTCATTTGCAAGAGAGACAGTTACTGGAACATAGGGATTTTATAGGACTGGACT
ATTCCTCTTTGTATATGTGTAAACCCAAAAGGAGCTTGAAGCGAGACGATACCAAGGATACCTACAAGTT
ACCGCACAGATTAATAGAAAAGAAGAGACGAGACCGAATTAATGAATGCATTGCTCAGCTGAAAGATTTA
CTGCCCGAACATCTGAAATTGACAACACTGGGGCATTTGGAGAAAGCAGTAGTCTTGGAATTAACTTTAA
AGCACTTGAAAGCGCTAACAGCCTTAACTGAGCAGCAGCATCAGAAGATAATTGCTTTACAGAATGTCTG
CGGATTATATCGCTGGAATGCCCAGGAAAAGCCGAGCTCACTGTAG

Translation (131 aa):
MDEGIPHLQERQLLEHRDFIGLDYSSLYMCKPKRSLKRDDTKDTYKLPHRLIEKKRRDRINECIAQLKDL
LPEHLKLTTLGHLEKAVVLELTLKHLKALTALTEQQHQKIIALQNVCGLYRWNAQEKPSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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