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Report for CCDS20308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20308.1 Public Mus musculus 6 Add2 23 108 98 CCDS HistoryNCBI Gene:11519Re-query CCDS DB by CCDS ID:20308.1Re-query CCDS DB by GeneID:11519See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032069.7 ENSMUSP00000032069.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032069.7Link to Ensembl Protein Viewer:ENSMUSP00000032069.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032069Re-query CCDS DB by Protein ID:ENSMUSP00000032069
Original member Current member EBI ENSMUST00000203786.2 ENSMUSP00000144694.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203786.2Link to Ensembl Protein Viewer:ENSMUSP00000144694.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203786Re-query CCDS DB by Protein ID:ENSMUSP00000144694
Original member Current member EBI ENSMUST00000204059.2 ENSMUSP00000145160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204059.2Link to Ensembl Protein Viewer:ENSMUSP00000145160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204059Re-query CCDS DB by Protein ID:ENSMUSP00000145160
Original member Current member EBI ENSMUST00000203724.2 ENSMUSP00000145296.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203724.2Link to Ensembl Protein Viewer:ENSMUSP00000145296.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203724Re-query CCDS DB by Protein ID:ENSMUSP00000145296
Original member Current member NCBI NM_001271857.1 NP_001258786.1 Accepted alive Link to Nucleotide Sequence:NM_001271857.1Link to Protein Sequence:NP_001258786.1Re-query CCDS DB by Nucleotide ID:NM_001271857Re-query CCDS DB by Protein ID:NP_001258786Link to BLAST:NP_001258786.1
Original member Current member NCBI NM_001271858.1 NP_001258787.1 Accepted alive Link to Nucleotide Sequence:NM_001271858.1Link to Protein Sequence:NP_001258787.1Re-query CCDS DB by Nucleotide ID:NM_001271858Re-query CCDS DB by Protein ID:NP_001258787Link to BLAST:NP_001258787.1
Original member Current member NCBI NM_001271859.1 NP_001258788.1 Accepted alive Link to Nucleotide Sequence:NM_001271859.1Link to Protein Sequence:NP_001258788.1Re-query CCDS DB by Nucleotide ID:NM_001271859Re-query CCDS DB by Protein ID:NP_001258788Link to BLAST:NP_001258788.1
Original member Current member NCBI NM_013458.5 NP_038486.2 Accepted alive Link to Nucleotide Sequence:NM_013458.5Link to Protein Sequence:NP_038486.2Re-query CCDS DB by Nucleotide ID:NM_013458Re-query CCDS DB by Protein ID:NP_038486Link to BLAST:NP_038486.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258786.1 725 Q9QYB8-1 725 100% 0 0
NP_001258787.1 725 Q9QYB8-1 725 100% 0 0
NP_001258788.1 725 Q9QYB8-1 725 100% 0 0
NP_038486.2 725 Q9QYB8-1 725 100% 0 0

Chromosomal Locations for CCDS 20308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86085862 86086044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86086904 86087042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86092824 86092975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86093402 86093482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86096686 86096835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86098576 86098719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86101155 86101253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86104482 86104658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86106047 86106304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86107355 86107474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86107897 86107986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86109709 86109862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86110820 86110945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86118477 86118781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGAGCGAGGACACGGTTCCCGAGGCGGCCTCCCCGCCACCCTCTCAGGGGCAGCACTACTTTGACCGGT
TCTCTGAAGATGATCCTGAGTACTTGCGACTTCGCAACCGTGCAGCTGACCTGCGACAGGACTTCAACTT
GATGGAGCAGAAGAAGAGGGTCACCATGATCCTGCAGAGCCCTTCTTTCAGGGAGGAGCTGGAAGGCCTC
ATCCAGGAGCAAATGAAGAAGGGCAACAACTCCTCCAACATCTGGGCCCTCCGACAGATCGCGGACTTCA
TGGCCAGCACCTCCCACGCAGTCTTCCCAGCTTCTTCCATGAACTTCTCCATGATGACACCCATCAACGA
CCTCCACACTGCCGACTCCCTGAACCTGGCCAAGGGGGAGAGGCTTATGCGGTGCAAGATCAGCAGCGTC
TACCGTCTCCTGGACCTCTACGGCTGGGCGCAGCTCAGTGACACCTACGTCACGCTGAGAGTGAGCAAGG
AGCAGGACCACTTCCTGATCAGCCCCAAGGGGGTTTCCTGCAGCGAGGTCACAGCCTCCAGCCTGATTAA
AGTGAACATTCTGGGAGAGGTGGTGGAGAAGGGCAGCAGTTGCTTCCCGGTGGACACCACGGGCTTCAGT
CTGCACTCAGCCATCTATGCCGCCAGGCCCGACGTGCGGTGTGCCATCCACCTGCACACGCCTGCCACCG
CAGCGGTGTCAGCTATGAAGTGCGGCCTCCTGCCGGTCTCCCATAATGCCCTGCTGGTGGGGGACATGGC
CTACTATGACTTCAATGGGGAAATGGAGCAGGAAGCTGACCGAATCAACTTGCAGAAGTGCCTTGGACCC
ACCTGCAAGATTCTGGTGCTAAGAAACCATGGCATGGTCGCCCTGGGTGACACCGTGGAGGAAGCTTTCT
ACAAGGTCTTCCATCTGCAGGCTGCGTGTGAGGTACAGGTGTCGGCTCTGTCCAGTGCTGGGGGCACTGA
GAACCTCATCCTCTTGGAGCAAGAGAAACACCGGCCGCACGAGGTGGGCTCTGTGCAGTGGGCCGGCAGC
ACCTTCGGGCCCATGCAGAAGAGCCGGCTGGGAGAGCATGAATTTGAAGCCCTCATGAGGATGCTGGACA
ATTTAGGCTACAGAACAGGCTATACGTACCGCCACCCCTTTGTCCAAGAGAAAACCAAACACAAAAGTGA
AGTGGAGATCCCAGCCACAGTCACTGCCTTTGTGTTTGAAGAGGATGGAGTCCCAGTCCCCGCCCTGCGC
CAGCACGCCCAGAAGCAGCAGAAGGAAAAGACCCGCTGGCTTAACACTCCCAACACCTACCTGCGGGTGA
ACGTGGCTGACGAGGTGCAGAGGAACATGGGCAGTCCCCGACCAAAGACCACGTGGATGAAGGCTGATGA
AGTGGAAAAGTCCAGCAGCGGCATGCCCATACGGATTGAAAACCCAAACCAATTTGTGCCTCTCTACACT
GACCCCCAGGAAGTTCTGGACATGAGGAACAAGATTCGAGAGCAAAACCGACAAGACATAAAGTCAGCCG
GGCCTCAGTCTCAGCTCTTGGCCAGTGTCATCGCAGAGAAGAGCCGGAGTCCGTCTACAGAGAGCCAGCT
GATGTCCAAGGGCGATGCAGATACCAAAGATGAATCGGAGGAGACGGTGCCCAACCCCTTCAGCCAACTC
ACTGACCAGGAGCTGGAGGAGTACAAGAAGGAGGTGGAAAGGAAGAAGCTAGAACAGGAGCAGGAAGGGG
AGAAGGACATAGCCACAGAGAAGCCTGGTTCACCTGTAAAGTCCACACCTGCATCCCCAGTGCAGAGCCC
ATCAAAAGCCGGGACCAAGAGCCCAGCGGTCTCTCCTTCCAAGACTTCAGAGGATACCAAGAAGACAGAA
GTCAGCGAAGCCAACACAGAGCCTGAGCCAGTGAAACCAGAAGGGCTGGTGGTGAATGGGAAGGAGGAGG
AGCCGAGCGTAGAAGAGGCCCTCAGCAAAGGACTGGGCCAGATGACCACCAACGCTGACACTGATGGCGA
CAGCTACAAGGACAAAACCGAGTCAGTTACCAGTGGCCCCTTGTCCCCAGAGGGCTCGCCCTCTAAGTCA
CCCTCCAAAAAGAAAAAGAAATTCCGAACCCCCTCGTTCCTGAAGAAAAGCAAGAAGAAGGAGAAGGTGG
AATCCTGA

Translation (725 aa):
MSEDTVPEAASPPPSQGQHYFDRFSEDDPEYLRLRNRAADLRQDFNLMEQKKRVTMILQSPSFREELEGL
IQEQMKKGNNSSNIWALRQIADFMASTSHAVFPASSMNFSMMTPINDLHTADSLNLAKGERLMRCKISSV
YRLLDLYGWAQLSDTYVTLRVSKEQDHFLISPKGVSCSEVTASSLIKVNILGEVVEKGSSCFPVDTTGFS
LHSAIYAARPDVRCAIHLHTPATAAVSAMKCGLLPVSHNALLVGDMAYYDFNGEMEQEADRINLQKCLGP
TCKILVLRNHGMVALGDTVEEAFYKVFHLQAACEVQVSALSSAGGTENLILLEQEKHRPHEVGSVQWAGS
TFGPMQKSRLGEHEFEALMRMLDNLGYRTGYTYRHPFVQEKTKHKSEVEIPATVTAFVFEEDGVPVPALR
QHAQKQQKEKTRWLNTPNTYLRVNVADEVQRNMGSPRPKTTWMKADEVEKSSSGMPIRIENPNQFVPLYT
DPQEVLDMRNKIREQNRQDIKSAGPQSQLLASVIAEKSRSPSTESQLMSKGDADTKDESEETVPNPFSQL
TDQELEEYKKEVERKKLEQEQEGEKDIATEKPGSPVKSTPASPVQSPSKAGTKSPAVSPSKTSEDTKKTE
VSEANTEPEPVKPEGLVVNGKEEEPSVEEALSKGLGQMTTNADTDGDSYKDKTESVTSGPLSPEGSPSKS
PSKKKKKFRTPSFLKKSKKKEKVES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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