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Report for CCDS24110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24110.1 Public Mus musculus 10 Gnptab 23 108 98 CCDS HistoryNCBI Gene:432486Re-query CCDS DB by CCDS ID:24110.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020251.9 ENSMUSP00000020251.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020251.9Link to Ensembl Protein Viewer:ENSMUSP00000020251.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020251Re-query CCDS DB by Protein ID:ENSMUSP00000020251
Original member Current member NCBI NM_001004164.3 NP_001004164.2 Accepted alive Link to Nucleotide Sequence:NM_001004164.3Link to Protein Sequence:NP_001004164.2Re-query CCDS DB by Nucleotide ID:NM_001004164Re-query CCDS DB by Protein ID:NP_001004164Link to BLAST:NP_001004164.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004164.2 1235 Q69ZN6-1 1235 100% 0 0

Chromosomal Locations for CCDS 24110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88379419 88379535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88400652 88400737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88411916 88412035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88412605 88412646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88414393 88414598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88419125 88419189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88419426 88419560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88428493 88428654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88429461 88429640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88429840 88430010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88431333 88431456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88432441 88432644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88433049 88434088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88436002 88436201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88436352 88436571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88437435 88437548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88439128 88439213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88439451 88439549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88440224 88440391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88443309 88443399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88445763 88445840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3708 nt):
ATGCTGCTTAAGCTCCTGCAGAGACAGACCTATACCTGCCTATCCCACAGGTATGGGCTCTACGTCTGCT
TCGTGGGCGTCGTTGTCACCATCGTCTCGGCTTTCCAGTTCGGAGAGGTGGTTCTGGAATGGAGCCGAGA
TCAGTACCATGTTTTGTTTGATTCCTACAGAGACAACATTGCTGGGAAATCCTTTCAGAATCGGCTCTGT
CTGCCCATGCCAATCGACGTGGTTTACACCTGGGTGAATGGCACTGACCTTGAACTGCTAAAGGAGCTAC
AGCAGGTCCGAGAGCACATGGAGGAAGAGCAGAGAGCCATGCGGGAAACCCTCGGGAAGAACACAACCGA
ACCGACAAAGAAGAGTGAGAAGCAGCTGGAATGTCTGCTGACGCACTGCATTAAGGTGCCCATGCTTGTT
CTGGACCCGCCCCTGCCAGCCAACTGCACCCTGAAGGATCTGCCAACCCTTTATCCATCTTTCCACGCTG
CCAGCGACATGTTCAATGTTGCGAAACCAAAAAATCCGTCTACTAATGTCTCCGTTGTCGTTTTTGACAC
TACTAAGGATGTTGAAGACGCCCATGCTGGACCGTTTAAGGGAGGCAGCAAACAGATGGTTTGGAGAGCC
TACTTGACAACAGACAAAGAAGCCCCTGGCTTAGTGCTGATGCAAGGCTTGGCGTTCCTGAGTGGATTCC
CACCGACCTTCAAGGAGACGAGTCAACTGAAGACAAAGCTGCCAGAAAAGCTTTCCTCTAAAATAAAGCT
GTTGCGGCTGTACTCGGAGGCCAGTGTCGCTCTTCTGAAATTGAATAATCCCAAGGGTTTCCAAGAGCTG
AACAAGCAGACCAAGAAGAACATGACCATCGATGGGAAGGAACTGACCATCAGCCCTGCGTATCTGCTGT
GGGACCTGAGTGCCATCAGCCAGTCCAAGCAGGATGAGGACGTGTCTGCCAGCCGCTTTGAGGATAATGA
AGAGCTGAGGTACTCGCTGCGATCTATCGAGAGACACGCGCCATGGGTACGGAATATTTTCATTGTCACC
AACGGGCAGATTCCATCCTGGCTGAACCTTGACAACCCTCGAGTGACCATAGTGACCCACCAGGACATTT
TCCAAAATCTGAGCCACTTGCCTACTTTCAGTTCCCCTGCTATTGAAAGTCACATTCACCGCATCGAAGG
GCTGTCCCAGAAGTTTATTTATCTAAATGACGATGTCATGTTCGGTAAGGACGTCTGGCCGGACGATTTT
TACAGCCACTCCAAAGGTCAAAAGGTTTATTTGACATGGCCTGTGCCAAACTGTGCAGAGGGCTGCCCGG
GCTCCTGGATTAAAGACGGCTATTGTGATAAGGCCTGTAATAACTCAGCCTGTGACTGGGATGGCGGAGA
CTGCTCTGGTAATACTGCAGGGAACCGGTTTGTTGCAGGAGGTGGGGGTACCGGGAATATTGGAGCTGGA
CAGCACTGGCAGTTTGGTGGAGGAATAAACACCATCTCTTACTGTAACCAAGGATGTGCAAACTCCTGGC
TGGCTGACAAGTTCTGTGACCAAGCCTGTAACGTCTTATCCTGCGGGTTTGATGCTGGTGACTGTGGACA
AGATCATTTTCATGAATTGTATAAAGTAACACTTCTCCCAAACCAGACTCACTATGTTGTCCCCAAAGGT
GAATACCTGTCTTATTTCAGCTTTGCAAACATAGCCAGAAGAGGAGTTGAAGGGACCTACAGCGACAACC
CCATCATCCGCCACGCGTCCATTGCAAACAAGTGGAAAACCATACACCTGATAATGCACAGTGGGATGAA
CGCAACCACGATCTATTTTAACCTCACTCTTCAAAACGCCAACGACGAAGAGTTCAAGATCCAGATAGCA
GTAGAGGTGGACACGAGGGAGGCGCCCAAACTGAATTCTACAACCCAGAAGGCCTATGAAAGTTTGGTTA
GCCCAGTGACACCTCTTCCTCAGGCTGACGTCCCTTTTGAAGATGTCCCCAAAGAGAAACGCTTCCCCAA
GATCAGGAGACATGATGTAAATGCAACAGGGAGATTCCAAGAGGAGGTGAAAATCCCCCGGGTAAATATT
TCACTCCTTCCCAAAGAGGCCCAGGTGAGGCTGAGCAACTTGGATTTGCAACTAGAACGTGGAGACATCA
CTCTGAAAGGATATAACTTGTCCAAGTCAGCCCTGCTAAGGTCTTTCCTGGGGAATTCACTAGATACTAA
AATAAAACCTCAAGCTAGGACCGATGAAACAAAAGGCAACCTGGAGGTCCCACAGGAAAACCCTTCTCAC
AGACGTCCACATGGCTTTGCTGGTGAACACAGATCAGAGAGATGGACTGCCCCAGCAGAGACAGTGACCG
TGAAAGGCCGTGACCACGCTTTGAATCCACCCCCGGTGTTGGAGACCAATGCAAGATTGGCCCAGCCTAC
ACTAGGCGTGACTGTGTCCAAAGAGAACCTTTCACCGCTGATCGTTCCCCCAGAAAGCCACTTGCCAAAA
GAAGAGGAGAGTGACAGGGCAGAAGGCAATGCTGTACCTGTAAAGGAGTTAGTGCCTGGCAGACGGTTGC
AGCAGAATTATCCAGGCTTTTTGCCCTGGGAGAAAAAAAAGTATTTCCAAGACCTTCTTGATGAGGAAGA
GTCATTGAAGACCCAGTTGGCGTACTTTACAGACAGCAAACATACCGGGAGGCAACTAAAAGATACATTT
GCAGACTCCCTCCGATACGTCAATAAAATTCTCAACAGCAAGTTTGGATTCACATCCAGGAAAGTCCCTG
CACACATGCCGCACATGATTGACAGGATCGTTATGCAAGAACTCCAAGATATGTTCCCTGAAGAATTTGA
CAAGACTTCATTTCACAAGGTGCGTCACTCTGAGGACATGCAGTTTGCCTTCTCCTACTTTTATTACCTC
ATGAGTGCAGTTCAGCCCCTCAATATTTCCCAAGTCTTTCATGAAGTAGACACAGACCAATCTGGTGTCT
TGTCTGATAGGGAAATCCGAACACTGGCCACGAGAATTCACGACCTACCTTTAAGCTTGCAGGATTTGAC
AGGTTTGGAACACATGTTAATAAATTGCTCAAAAATGCTCCCCGCTAATATCACTCAACTCAACAACATC
CCACCGACTCAGGAAGCATACTACGACCCCAACCTGCCTCCGGTCACTAAGAGTCTTGTCACCAACTGTA
AGCCAGTAACTGACAAGATCCACAAAGCCTATAAAGACAAGAACAAATACAGGTTTGAAATCATGGGAGA
GGAAGAAATCGCTTTCAAGATGATACGAACCAATGTTTCTCATGTGGTTGGCCAGTTGGATGACATCAGA
AAAAACCCCAGGAAGTTCGTTTGTCTGAATGACAACATTGACCACAACCATAAAGATGCCCGGACAGTGA
AGGCTGTCCTCAGGGACTTCTATGAGTCCATGTTTCCCATACCTTCCCAGTTTGAGCTGCCAAGAGAGTA
TCGGAACCGCTTTCTGCACATGCATGAGCTCCAAGAATGGCGGGCATATCGAGACAAGCTGAAGTTTTGG
ACCCACTGCGTACTAGCAACGTTGATTATATTTACTATATTCTCATTTTTTGCTGAACAGATAATTGCTC
TGAAGCGAAAGATATTTCCCAGGAGGAGGATACACAAAGAAGCTAGTCCAGACCGAATCAGGGTGTAG

Translation (1235 aa):
MLLKLLQRQTYTCLSHRYGLYVCFVGVVVTIVSAFQFGEVVLEWSRDQYHVLFDSYRDNIAGKSFQNRLC
LPMPIDVVYTWVNGTDLELLKELQQVREHMEEEQRAMRETLGKNTTEPTKKSEKQLECLLTHCIKVPMLV
LDPPLPANCTLKDLPTLYPSFHAASDMFNVAKPKNPSTNVSVVVFDTTKDVEDAHAGPFKGGSKQMVWRA
YLTTDKEAPGLVLMQGLAFLSGFPPTFKETSQLKTKLPEKLSSKIKLLRLYSEASVALLKLNNPKGFQEL
NKQTKKNMTIDGKELTISPAYLLWDLSAISQSKQDEDVSASRFEDNEELRYSLRSIERHAPWVRNIFIVT
NGQIPSWLNLDNPRVTIVTHQDIFQNLSHLPTFSSPAIESHIHRIEGLSQKFIYLNDDVMFGKDVWPDDF
YSHSKGQKVYLTWPVPNCAEGCPGSWIKDGYCDKACNNSACDWDGGDCSGNTAGNRFVAGGGGTGNIGAG
QHWQFGGGINTISYCNQGCANSWLADKFCDQACNVLSCGFDAGDCGQDHFHELYKVTLLPNQTHYVVPKG
EYLSYFSFANIARRGVEGTYSDNPIIRHASIANKWKTIHLIMHSGMNATTIYFNLTLQNANDEEFKIQIA
VEVDTREAPKLNSTTQKAYESLVSPVTPLPQADVPFEDVPKEKRFPKIRRHDVNATGRFQEEVKIPRVNI
SLLPKEAQVRLSNLDLQLERGDITLKGYNLSKSALLRSFLGNSLDTKIKPQARTDETKGNLEVPQENPSH
RRPHGFAGEHRSERWTAPAETVTVKGRDHALNPPPVLETNARLAQPTLGVTVSKENLSPLIVPPESHLPK
EEESDRAEGNAVPVKELVPGRRLQQNYPGFLPWEKKKYFQDLLDEEESLKTQLAYFTDSKHTGRQLKDTF
ADSLRYVNKILNSKFGFTSRKVPAHMPHMIDRIVMQELQDMFPEEFDKTSFHKVRHSEDMQFAFSYFYYL
MSAVQPLNISQVFHEVDTDQSGVLSDREIRTLATRIHDLPLSLQDLTGLEHMLINCSKMLPANITQLNNI
PPTQEAYYDPNLPPVTKSLVTNCKPVTDKIHKAYKDKNKYRFEIMGEEEIAFKMIRTNVSHVVGQLDDIR
KNPRKFVCLNDNIDHNHKDARTVKAVLRDFYESMFPIPSQFELPREYRNRFLHMHELQEWRAYRDKLKFW
THCVLATLIIFTIFSFFAEQIIALKRKIFPRRRIHKEASPDRIRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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