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Report for CCDS36372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36372.1 Public Mus musculus 11 Trim80 23 108 98 CCDS HistoryNCBI Gene:432613Re-query CCDS DB by CCDS ID:36372.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 36372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093914.4 ENSMUSP00000091442.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093914.4Link to Ensembl Protein Viewer:ENSMUSP00000091442.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000093914Re-query CCDS DB by Protein ID:ENSMUSP00000091442
Original member Current member NCBI NM_001033775.3 NP_001028947.1 Accepted alive Link to Nucleotide Sequence:NM_001033775.3Link to Protein Sequence:NP_001028947.1Re-query CCDS DB by Nucleotide ID:NM_001033775Re-query CCDS DB by Protein ID:NP_001028947Link to BLAST:NP_001028947.1

Chromosomal Locations for CCDS 36372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115440554 115440606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115440707 115440750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115441081 115441745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115445016 115445111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115445311 115445544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115446406 115446568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115446758 115446820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115447664 115448220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGAAACAGCGGCCACAGAGAAAGGAGAGAAGACGGCAATCATCGGTCCACAGGGCAACAAAATATCTGG
CTCTCATGGACATGCAGAAGATCTCAAGATCAGCCCAGGACAAACCCCCCTCACAGCTCTCTTCCCAGCC
CTCCAGAACCCCGCTCCATCTCCTGATGGGCAGCAACAGCAGTCAGCACATGTTGGAAGACCAAGTCCTC
TGTCCCATTTGCCTGGAGGTGTTCTGCAACCCAGTCACTACCGCCTGCGGCCATAACTTCTGTATGACTT
GCCTTCAGAATTTCTGGGACCACCAGGCTGCCATTGGAGAGACTTACTATTGCCCCCAGTGCAGAGAGGC
CTTCTCCAGCAGGCCCCGCCTCTGCAAGAACGTCATCCTCGGGGAGATGGTGGCTTGCTTCACCCAGGCC
AAGAGCCAGACCTCAGGGTCCTTGTGGGGCCTGGCTGGCCCCACAGATGTGCCCTGTGACTTTTGCTCTC
CGCAGAAGCTGAGGGCAGCCAAGTCATGCCTGCAGTGTGTGGCTTCCTTGTGTGAGAAACATCTGCGCAG
CCACTTTGAGGACCAGCTGTTCCAGGACCACCAGCTGTTGGACCCAGTGTGGGACCTCACGAACCGCTTG
TGCCGCAAGCATCGCAAGCTCCGGCAGCTGTATTGCCGCACGGAGGGCAGCTGCGTGTGCGGAGCCTGCC
TATTGGAGGAGCACAAGAACCATGACACCACCCCCCTGGAGGATGAACGGGCCCGCAAAGAGGTGGAAGT
TCGGAAGATTCAGGCCAATGTGGAGAACCAGATGCTGATCATTGCCTCTGACAGTCAGAAACACCAGGGA
CGAGTGAGTTTTCTCTCGAAACTGATTCAGACCATGCGAGACGAGGTGGACACCTGCTTCTCAGAGATCC
TCCATGAGATTAAACAGCTGCAGATGAAGGTCTTGGATTTTGTGGAGAAGGAGGAGGCGGCCGCCCTAGG
AAAGCTGGGCAACTCTATCCAGCAAAGCCACAACCGGCTGCTCAAGTTGGAGGGGGACAGCGTCTGGCTC
CACAGCCTGCTCGCCAACAGGAGTGATGAGCAATTCCTACAGGAGTTCCCCAAACTGAAGCACTTCCCTG
CCTGCGTGGAACCCTTGCTAGGCACCAACTGTGAGGAGACACAGAGCTTCCTTCAGCTGCCAGAGACCCT
GTCGCAGCTCCGGATCAGGCTGATGGACATAGGGCTTAGCTTTATCAACCAGCTTCTCTTGAAGGGAATC
AGGATGAGCTCCTATGAGGTGCTGCCCGGAACTGTGGAGAGAAAGACACTGCTCCAGAATTACTGCAACC
TGAACTTTGACCCCTGCACGGCCAGCGAAGAGCTGTTCTTGTTCAAGGAAACACACTCGGTGTTGAACTT
GGGCATCCTTCTGGAGCCCTCGACCACCAACAGCCCGTTACCGGGCTTCAAGCAGTGGCCCCAGGTTCTG
TGCTGCCCAGGCCTGTCCGAAGGCTGTCACTACTGGGAGGCTGAGGTGTCCAACTCGTGGATGTGCCTGG
GAGTCACCTACCGTCGCAGCCCTCCGCTGAGCGGTCGCCCCCGTCGCAACATCGTCTACCTGCTGGGCCG
CAACCCCTACTCATGGTGTCTGGAGTGGGATTCGCTCAAGTTCTCTGTGTGGCACAACAACACACAGACG
GTGCTACACGGATCCTACCACCACACGCTCGGCGTGGCGCTGGACTTCAGGACTGGCTGCCTGTCCTTCT
ACAGCGTGGCGGGCGACGTGAACCTCCTCTACCGCTTCCTCACCTCCTTCCTCGAACCCCTGTACCCCGC
GGTCATGGTCAGCAGTGGAGCCTCGCTCACACTCAAGCAGTATCCTGAGGCATAG

Translation (624 aa):
MKQRPQRKERRRQSSVHRATKYLALMDMQKISRSAQDKPPSQLSSQPSRTPLHLLMGSNSSQHMLEDQVL
CPICLEVFCNPVTTACGHNFCMTCLQNFWDHQAAIGETYYCPQCREAFSSRPRLCKNVILGEMVACFTQA
KSQTSGSLWGLAGPTDVPCDFCSPQKLRAAKSCLQCVASLCEKHLRSHFEDQLFQDHQLLDPVWDLTNRL
CRKHRKLRQLYCRTEGSCVCGACLLEEHKNHDTTPLEDERARKEVEVRKIQANVENQMLIIASDSQKHQG
RVSFLSKLIQTMRDEVDTCFSEILHEIKQLQMKVLDFVEKEEAAALGKLGNSIQQSHNRLLKLEGDSVWL
HSLLANRSDEQFLQEFPKLKHFPACVEPLLGTNCEETQSFLQLPETLSQLRIRLMDIGLSFINQLLLKGI
RMSSYEVLPGTVERKTLLQNYCNLNFDPCTASEELFLFKETHSVLNLGILLEPSTTNSPLPGFKQWPQVL
CCPGLSEGCHYWEAEVSNSWMCLGVTYRRSPPLSGRPRRNIVYLLGRNPYSWCLEWDSLKFSVWHNNTQT
VLHGSYHHTLGVALDFRTGCLSFYSVAGDVNLLYRFLTSFLEPLYPAVMVSSGASLTLKQYPEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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