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Report for CCDS51385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51385.1 Public Mus musculus 4 Slc2a7 23 108 98 CCDS HistoryNCBI Gene:435818Re-query CCDS DB by CCDS ID:51385.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51385.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059893.7 ENSMUSP00000059106.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059893.7Link to Ensembl Protein Viewer:ENSMUSP00000059106.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000059893Re-query CCDS DB by Protein ID:ENSMUSP00000059106
Original member Current member NCBI NM_001085529.2 NP_001078998.1 Accepted alive Link to Nucleotide Sequence:NM_001085529.2Link to Protein Sequence:NP_001078998.1Re-query CCDS DB by Nucleotide ID:NM_001085529Re-query CCDS DB by Protein ID:NP_001078998Link to BLAST:NP_001078998.1

Chromosomal Locations for CCDS 51385.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 150148972 150149022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150149481 150149590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150152103 150152288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150154667 150154791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150157438 150157590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150158082 150158207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150158475 150158665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150160019 150160129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150163198 150163299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150165109 150165184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150166355 150166482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 150168264 150168482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGAGGACAAAGAGATAGGGACACCTCTGCCCTTGCCACACTCGGAAGCGCGTCTGCAGCCCACACTAG
TCCTGACTACCCTAAGTGCTGCCTTTGGCTCAGTCTTCCAGTATGGCTACAACATCGCCGTGATCAACAC
ACCTCACAAGGTGGGCACAAGCAACAGATGGGGTCCTGTCTTTCAGGTCCTGAAGTCGTTTTACAATGAC
ACGCACTTTGAGCGACACGGAACATTCATGGATGAGAGTACTCTGCTGCTCCTGTGGTCTTGCACGGTCT
CCATGTTCCCTCTGGGAGGGTTGCTGGGGTCCTTGGTGGTTGGCCTGATGGTCAATAAGTGGGGCAGAAA
GGGAACACTGTTGATCAACAATGTCTTCGCTATAACCTCTGCCGTCCTGATGGGAGTCAGCAAGGTGGCC
CGGGCTTTTGAGCTGATCATCCTGTCTCGAGTGCTGGTGGGAATCTGCGCAGGCATCGCTTACAGTACTC
TTCCCATGTACCTGGGAGAACTGGCTCCCCAGAACCTTAGGGGTGCATTAGGGACAATGACGGAGGTATT
CGTCATCATCGGAGTCCTCTTGGCTCAGATTTTCAGCCTGCAGGCCATCCTGGGTAATGCCACAGGCTGG
CCAATCCTCTTGGCTCTCACGGGGGTCCCTGCAGTGATTCAGCTCCTCTCTCTGCCCTTCTTCCCTGAGA
GCCCCCGCTACACTCTGATTGAGAAAGGAGACGAGGAGACGGCTAGACAAGCTCTAAGGAGGCTGCGAGG
TCAAAACTACAATGTGGAGGCCGAGATGGAAGAAATGCGCACAGAGGAGCGCACCGAGCAAGCCGAGGGT
CGTCTGTCCGTACTCAACCTCTTCACCTTTCGGCCCCTGCGCTGGCAGCTGATCTCTATCGTTGTGCTCA
TGGCGGGCCAGCAGCTGTCCGGGATCAACGCGGTCAACTACTACGCAGATGTCATCTACACCTCAGCTGG
TGTGGACCCCACCCAGTCCCAGTATGTGACCCTGGGCTCTGGTGTCATCAACTTGGTGATGACTCTCGTC
TCGGCCGTTATCATAGAGCGTTTGGGGCGACGGATTCTCCTGCTGTCTGGCTATGCCATCTGCTGCTCTG
CCTGCCTGGTACTGACCGTGGCACTCCTCCTCCAGAGCACGGCCCCTGAGCTGTCTTACCTTAGTATCGT
CTGTGTGTTCTCCTACATCGTGGGACATTCCATAGGACCCAGTCCTGTCCCCTCGGTGGTGAGGACAGAG
ATTGTCCTGCAGTCCTCTCGGACAGCCGCCTTCACTGTGGACGGGGCTGTGCACTGGCTCACCAACTTCA
TCGTGGGGTTGACGTTTCCATCCATCCAGGTGGCCATCGGAGCCTACAGCTTTCTCGTCTTCGCTGGCGT
CTGTATCCTCACTGCTGCTTATATCTACGTGGTAATCCCTGAAACCAAGGGCAGGACATTTGTAGAGATA
AACTGTGCTTTTGCCAAGAGAAATGGAGTGGAGTTTCCAGAAGAGAAAGAAGTAGCCACGGCCAAGCCTC
ACACACCGTCTCTGCCTACCAAGGAAACAGCCTTTTGA

Translation (525 aa):
MEDKEIGTPLPLPHSEARLQPTLVLTTLSAAFGSVFQYGYNIAVINTPHKVGTSNRWGPVFQVLKSFYND
THFERHGTFMDESTLLLLWSCTVSMFPLGGLLGSLVVGLMVNKWGRKGTLLINNVFAITSAVLMGVSKVA
RAFELIILSRVLVGICAGIAYSTLPMYLGELAPQNLRGALGTMTEVFVIIGVLLAQIFSLQAILGNATGW
PILLALTGVPAVIQLLSLPFFPESPRYTLIEKGDEETARQALRRLRGQNYNVEAEMEEMRTEERTEQAEG
RLSVLNLFTFRPLRWQLISIVVLMAGQQLSGINAVNYYADVIYTSAGVDPTQSQYVTLGSGVINLVMTLV
SAVIIERLGRRILLLSGYAICCSACLVLTVALLLQSTAPELSYLSIVCVFSYIVGHSIGPSPVPSVVRTE
IVLQSSRTAAFTVDGAVHWLTNFIVGLTFPSIQVAIGAYSFLVFAGVCILTAAYIYVVIPETKGRTFVEI
NCAFAKRNGVEFPEEKEVATAKPHTPSLPTKETAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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