NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19380.1 Public Mus musculus 5 Tmprss11c 23 108 98 CCDS HistoryNCBI Gene:435845Re-query CCDS DB by CCDS ID:19380.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059424.9 ENSMUSP00000062915.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059424.9Link to Ensembl Protein Viewer:ENSMUSP00000062915.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059424Re-query CCDS DB by Protein ID:ENSMUSP00000062915
Original member NCBI NM_001030297.2 NP_001025468.1 Updated not alive Link to Nucleotide Sequence:NM_001030297.2Link to Protein Sequence:NP_001025468.1Re-query CCDS DB by Nucleotide ID:NM_001030297Re-query CCDS DB by Protein ID:NP_001025468
Current member NCBI NM_001030297.3 NP_001025468.1 Accepted alive Link to Nucleotide Sequence:NM_001030297.3Link to Protein Sequence:NP_001025468.1Re-query CCDS DB by Nucleotide ID:NM_001030297Re-query CCDS DB by Protein ID:NP_001025468Link to BLAST:NP_001025468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025468.1 431 Q1JRP2 431 100% 0 0

Chromosomal Locations for CCDS 19380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86231752 86231913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86235432 86235574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86237621 86237880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86239327 86239498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86242965 86243003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86256295 86256455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86259905 86259972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86271408 86271526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86282033 86282148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86289205 86289260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGCAAGGGGACAGCCTCGGAGGAGCGAAGAGCAATGGACAGCCTTGCAGAACAGAACAGAGTGCAAAA
CAAAGATAAAACTCACAAGGTGTGGCAAGATTACCCTGGGCATCTTAACGGCGGTGCTTGCGGCAGTACT
GATTGGACTCATTGCCTATTTTGCCGCCTGTGGAAAAGACTCTTTCTACTACCATGTCAGCTTTAAGGTT
AACAACATTGACTATGACAGCAAATTTGCAAAGCCATATTCTCAGGAATACATGGACCTAAATAAAAGGA
TAGTGTCTTTGATGAATGAAACATTTCATGAATCAAAACTGAGAAAACAGTACGTCAAAGCTCACACTGT
GCAAGTAAGCAAAGCCAAAGGGAAGGTGGTGATACATGCTGTGCTGAAGTTTAAAGCCTGTTATAGAAAT
AATGTAGAAAAATACTGGGAAAGCGTTGAAACCACTTTGTATCAGAAACTCAAAGGCCAAACTGGATTAC
TTATAGACTCTTCCTCATTTAAATTTTCAGACATTGCAATGCCAATAGCAGAAGATCTTCTCAATACATG
TTGTGGACGACGCACAATTATTCATAGAGGTCACAAAGTAGCAGGAGGCCAGGATGCTGAGGAAGGAGAA
TGGCCCTGGCAAGCCAGCCTTCAACAGAACAGTGTCCACCGATGTGGAGCTACTCTGATCAGTAACTACT
GGCTTATCACTGCTGCTCACTGTTTCATACGGGCTGCAAACCCCAAAGACTGGAAAGTTAGCTTTGGGTT
TCTTCTAAGTAAACCACAAGCACCACGAGCTGTCAAGAATATTATAATCCACGAGAACTACAGTTACCCT
GCACATGATAATGACATAGCTGTTGTGCGTCTGTCTTCGCCAGTATTGTATGAAAGCAACATCCGAAGGG
CTTGTCTACCAGAAGCTACTCAGAAGTTCCCACCCAACTCAGATGTAGTGGTCACTGGGTGGGGAACGTT
AAAATCGGATGGAGACAGTCCTAATATTCTCCAGAAAGGAAAAGTGAAGATTATAGACAATAAGACCTGT
AATAGTGGAAAGGCATATGGTGGCATGATCACACCTGGAATGATGTGTGCTGGGTTCCTGAAGGGACGTG
TTGATGCCTGCCAGGGTGATTCTGGTGGACCATTGGTTAGTGAAGATTCTAAGGGCATCTGGTTCCTCGC
TGGTATTGTAAGCTGGGGCGATGAATGTGCACTTCCAAACAAGCCTGGTGTCTACACTCGGGTGACATAC
TATCGAGACTGGATCACATCCAAAACTGGTCTCTAG

Translation (431 aa):
MARGQPRRSEEQWTALQNRTECKTKIKLTRCGKITLGILTAVLAAVLIGLIAYFAACGKDSFYYHVSFKV
NNIDYDSKFAKPYSQEYMDLNKRIVSLMNETFHESKLRKQYVKAHTVQVSKAKGKVVIHAVLKFKACYRN
NVEKYWESVETTLYQKLKGQTGLLIDSSSFKFSDIAMPIAEDLLNTCCGRRTIIHRGHKVAGGQDAEEGE
WPWQASLQQNSVHRCGATLISNYWLITAAHCFIRAANPKDWKVSFGFLLSKPQAPRAVKNIIIHENYSYP
AHDNDIAVVRLSSPVLYESNIRRACLPEATQKFPPNSDVVVTGWGTLKSDGDSPNILQKGKVKIIDNKTC
NSGKAYGGMITPGMMCAGFLKGRVDACQGDSGGPLVSEDSKGIWFLAGIVSWGDECALPNKPGVYTRVTY
YRDWITSKTGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH