NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85515.1 Public Mus musculus 8 Adam5 23 108 98 CCDS HistoryNCBI Gene:11499Re-query CCDS DB by CCDS ID:85515.1Re-query CCDS DB by GeneID:11499See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209935.1 ENSMUSP00000147290.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209935.1Link to Ensembl Protein Viewer:ENSMUSP00000147290.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209935Re-query CCDS DB by Protein ID:ENSMUSP00000147290
Original member Current member NCBI NM_001272057.1 NP_001258986.1 Accepted alive Link to Nucleotide Sequence:NM_001272057.1Link to Protein Sequence:NP_001258986.1Re-query CCDS DB by Nucleotide ID:NM_001272057Re-query CCDS DB by Protein ID:NP_001258986Link to BLAST:NP_001258986.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258986.1 699 Q3TTE0-3 699 100% 0 0

Chromosomal Locations for CCDS 85515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 24733084 24733157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24746657 24746771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24747482 24747568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24781566 24781782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24782531 24782621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24786134 24786329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24791935 24792030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24804358 24804544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24806393 24806526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24810001 24810082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24810691 24810848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24811050 24811121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24812385 24812450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24813385 24813562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24815090 24815166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24815451 24815529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24818096 24818151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24818723 24818802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24823940 24823994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2100 nt):
ATGTTCCTCCTTCTTTTGCTCTTTTTGCATCTTAAAGGGCTGCAGGCAGGCCAGAATCCTCAGAAAACCA
CCCTGCAGACAACTGTTCCTGAAAAGATCTCATCACCGGATGTGGAAACAGATGCAGAAGACCATATGGC
TTATCTTATTACAATAAATGAAACCCCCCATTTCATCCATCTTAAAAAACAATCATTTATAACTCCAACT
GCAGTTGTTTATACTTACGACAGAAATGATGTTCAACATTCTCAACCTTTGTCAGCTCTGGAAAATTGCA
ATTACAATGGATATGTTGCAGGTTTCCCAAACTCTATCGTGACCCTCACCGTTTGCACAGGACTCAGGGG
AATCATACAGTTTGAAAATGTCTCCTATGCAATCGAGCCCGTGGAAACCCTGTCAGGATTTGTGCACGTG
ATCTATGAGAACACAAACAAACATGCTGTGATTCCTGACCTGGGAAAGAATCAGTCATACAGTTGGTTTG
ACGAATCAGATTATCAATTCCGGAGTAACATGAAGAAATCTGGATTTACCGTGTTACGCCAACGATTCAT
TATGATGGATATCATCGTGGATAAAAAGCTGTTTGATTACATGGGTTCTGACACTGAAGTTGTGCTACAG
AAAGTCATTCAGATCATCGGTTTCGTTAACACTATGCTCTCCAAGTTAAAACTGACTGTCTTAATAAATT
CCATTGAAATCTGGTCGAAGGAAAACAGAATTCGTTTATCAAAGGCAGTTGATGACTTATTGGTTCAGTT
CTCAATTTGGAAACATGAGTATAGATCACAACATGTTGCATACTTACTGGCATTTGAGGAGCACCCTGCT
TCCACGGGGGCTCTATATCCAGGGAATCTGTGCAAACTGGAGTACAATGCTGCTGTTGCCCTGTATCCAA
AAGGTTTATCGTTAGAATCGTTTAGTGTCATTGTCCTGCAGCTGCTGAGCATTGGTATGGGCTTAACTTA
CGACACTGAGAACTGCCACTGTACAGGAGAAGTTTGCCTAATGACGCCCAAAGCAATATATTCTGGGGGT
GTGAAGGACTTCAGTACTTGTACCCTGGATGACTTTAAATACCTGTCAACAAGACAAGACCTTAGATGTC
TCCAGGACTTGCCTTTGGAAAGAAAGCCAGCTCGCAGGCCAAGGAGAATCTGTGGCAATGGGATACTGGA
GATGAACGAGCAATGTGACTGTGGCACTTTGAAGAACTGTACACATAGAAAATGCTGTGACCCTATGTCA
TGTCGATTGAAAAACAAGGCCACGTGTGGTTCTGGGGAGTGCTGTAGTCAAGATTGCACGGTAAAAATGA
ATGATGTGGTCTGTAGAAAGTCGGTAGATGAATGTGACTTTGTGGAGTACTGTAACGGAAAAGATCCCTA
TTGTGTCCCTAACACATATGCACGCAATGGGCAGTATTGTGAATCAGGTGAAGCCTTCTGTTTTGAAGGA
CGATGTCAGACTGCTGACAAGCAATGTATGAGCATGCTTGGGAAATACGTGAGAGGGGCTTCCTTTGCGT
GCTATGAAGAGTTCAATTCCAGAGGCGATAGATTTGGCAACTGTATTCATAATTTTTGTGCTTTCAGAAA
TTCTCTCTGTGGGAAACTAATCTGTACGTGGCCATTCAAGAAGCTGGTGCTAAAAGCCAATTTATCTGTG
GCCTATGCGCAAATCCGGGATGACTTGTGTGTAGCTATGTATAAAGGTGGGAGGATACCTAAGACAACAA
AGACGACATATTCCAATCCAGCGGACAGAGATGAGACATTTGTAAACGACGGCACCATCTGTGGCCCTGA
TATGTTTTGTTTGAGAGCATCATGCACAGAAACTAGATTTCACATGGATTCTTCCAAGTGTGATTCAACT
AGAGATTGCAACGACCATGGGGTTTGCAACAATTTACAGCATTGCCACTGTGATATAGGATATAACCCTC
CTTTTTGTGAGGAACATAAGGGACAGTTTGGAAGCGTTGATGATGGACATAAATATCATGTTGAAGCACC
TCCCACTAATCAAGTATTGCTACCCCAAAAGAAGATAATCTGGATTAACCATGAGAAACTGACATTCTGA

Translation (699 aa):
MFLLLLLFLHLKGLQAGQNPQKTTLQTTVPEKISSPDVETDAEDHMAYLITINETPHFIHLKKQSFITPT
AVVYTYDRNDVQHSQPLSALENCNYNGYVAGFPNSIVTLTVCTGLRGIIQFENVSYAIEPVETLSGFVHV
IYENTNKHAVIPDLGKNQSYSWFDESDYQFRSNMKKSGFTVLRQRFIMMDIIVDKKLFDYMGSDTEVVLQ
KVIQIIGFVNTMLSKLKLTVLINSIEIWSKENRIRLSKAVDDLLVQFSIWKHEYRSQHVAYLLAFEEHPA
STGALYPGNLCKLEYNAAVALYPKGLSLESFSVIVLQLLSIGMGLTYDTENCHCTGEVCLMTPKAIYSGG
VKDFSTCTLDDFKYLSTRQDLRCLQDLPLERKPARRPRRICGNGILEMNEQCDCGTLKNCTHRKCCDPMS
CRLKNKATCGSGECCSQDCTVKMNDVVCRKSVDECDFVEYCNGKDPYCVPNTYARNGQYCESGEAFCFEG
RCQTADKQCMSMLGKYVRGASFACYEEFNSRGDRFGNCIHNFCAFRNSLCGKLICTWPFKKLVLKANLSV
AYAQIRDDLCVAMYKGGRIPKTTKTTYSNPADRDETFVNDGTICGPDMFCLRASCTETRFHMDSSKCDST
RDCNDHGVCNNLQHCHCDIGYNPPFCEEHKGQFGSVDDGHKYHVEAPPTNQVLLPQKKIIWINHEKLTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH