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Report for CCDS71751.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71751.1 Public Mus musculus 6 Trim24 23 108 98 CCDS HistoryNCBI Gene:21848Re-query CCDS DB by CCDS ID:71751.1Re-query CCDS DB by GeneID:21848See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71751.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120428.7 ENSMUSP00000113063.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120428.7Link to Ensembl Protein Viewer:ENSMUSP00000113063.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120428Re-query CCDS DB by Protein ID:ENSMUSP00000113063
Original member Current member NCBI NM_001272064.1 NP_001258993.1 Accepted alive Link to Nucleotide Sequence:NM_001272064.1Link to Protein Sequence:NP_001258993.1Re-query CCDS DB by Nucleotide ID:NM_001272064Re-query CCDS DB by Protein ID:NP_001258993Link to BLAST:NP_001258993.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258993.1 1017 Q64127-2 1017 100% 0 0

Chromosomal Locations for CCDS 71751.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 37871111 37871474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37903533 37903651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37908217 37908364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37915165 37915297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37919374 37919490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37927526 37927640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37931354 37931500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37943413 37943530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37945521 37945687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37949222 37949398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37951452 37951625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37953494 37953629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37956403 37956475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37957004 37957172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37957509 37957837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37958562 37958694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37960781 37960855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37964703 37964852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 37965501 37965710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3054 nt):
ATGGAGGTGGCTGTGGAGAAGGCGGCGGCGGCAGCGGCTCCGGCCGGAGGCCCCGCAGCGGCGGCGCCGA
GCGGGGAGAATGAGGCCGAGAGCCGGCAGGGCCCGGACTCGGAGAGCGGCGGCGAGGCGTCCCGGCTCAA
CCTGTTGGACACTTGCGCCGTGTGCCACCAGAACATCCAGAGCCGGGTGCCCAAGCTGCTGCCCTGCCTG
CACTCGTTCTGCCAGCGCTGTTTGCCCGCGCCGCAGCGCTATCTCATGCTGACGGCGCCCGCGCTGGGCT
CGGCAGAGACCCCTCCACCCGCTCCCGCCCCCGCCCCCGCCCCGGGCTCCCCGGCCGGTGGTCCTTCGCC
ATTCGCCACCCAAGTTGGAGTCATTCGATGCCCAGTTTGCAGTCAAGAGTGTGCTGAGAGACACATCATA
GACAACTTTTTTGTGAAGGACACCACTGAAGTTCCTAGTAGTACAGTAGAAAAGTCTAATCAGGTATGTA
CAAGCTGTGAAGACAATGCAGAAGCTAATGGGTTTTGTGTAGAGTGTGTTGAATGGCTCTGCAAGACATG
TATTAGAGCTCACCAGAGGGTGAAGTTCACAAAAGACCACACAGTCAGGCAGAAAGAAGAAGTATCTCCA
GAGGCAGTTGGGGTGACCAGTCAGCGACCAGTGTTTTGTCCCTTCCATAAAAAGGAGCAGTTGAAACTTT
ACTGTGAAACATGTGATAAACTGACCTGTCGAGACTGCCAGCTGCTAGAACACAAAGAACACAGGTATCA
ATTTATAGAAGAAGCTTTTCAGAATCAAAAAGTGATCATAGATACTCTAATCACCAAACTGATGGAAAAA
ACAAAATATATAAAGTATACAGGAAATCAGATCCAAAATAGGATAATTGAAATAAATCAAAACCAAAAGC
AGGTGGAACAGGATATTAAAGTTGCCATCTTCACATTGATGGTGGAGATAAACAAAAAAGGGAAAGCTCT
GCTGCACCAGCTTGAGAGTCTTGCAAAGGACCATCGAATGAAACTCATGCAACAACAGCAGGAAGTGGCT
GGGCTTTCTAAGCAGTTAGAGCACGTCATGCATTTTTCTAAATGGGCTGTTTCCAGTGGCAGCAGCACAG
CCTTGCTGTACAGCAAGCGGCTGATTACATACAGGTTACGGCACCTTCTTCGTGCAAGGTGTGATGCTTC
TCCTGTGACCAACACCACCATCCAGTTTCACTGTGATCCTAGTTTCTGGGCTCAAAATATTATCAACTTG
GGTTCTTTAGTAATCGAGGATAAAGAGAGCCAGCCACAAATGCCTAAGCAGAATCCTGTCGTGGAGCAGA
GTTCACAGCCACCAGGTGGTTTACCTTCCAACCAGTTATCCAAGTTCCCAACACAGATCAGCCTAGCTCA
GTTACGACTCCAGCATATTCAGCAACAGCATCCGCCACCACGCTTAATAAACTTTCAGAATCACAGCCCT
AAGCCCAATGGACCAGTTCTTCCTCCTTATCCTCAGCAGCTGAGATATTCACCAAGCCAGAATGTACCTC
GGCAGACAACAATAAAGCCCAACCCCTTGCAAATGGCTTTTTTGGCTCAACAGGCCATAAAACAGTGGCA
GATCAGCAGTGTACAGGCTCCGCCCACAACTGCCAGCAGCTCCTCCTCCACGCCGTCCAGCCCCACAATC
ACAAGTGCAGCTGGGTACGATGGAAAAGCTTTTAGTTCACCCATGATTGATCTGAGTGCACCGGTGGGAG
GGTCTTACAATCTTCCTTCTCTTCCAGATATTGATTGTTCAAGTACTATAATGTTGGACAACATTGCAAG
GAAAGACACAGGTGTAGATCACGCCCAGCCGAGGCCTCCGTCAAACAGAACGGTGCAGTCACCAAATTCA
TCAGTGCCATCTCCAGGCCTTGCAGGGCCTGTTACTATGACTAGCGTCCATCCCCCAATACGTTCACCTA
GTGCCTCCAGTGTTGGAAGTCGAGGAAGCTCTGGCTCTTCCAGCAAACCAGCAGGAGCTGATTCTACTCA
CAAGGTCCCAGTAGTCATGCTGGAGCCAATTCGAATAAAACAGGAAAACAGTGGACCACCTGAAAATTAT
GATTTTCCTGTTGTTATAGTAAAACAAGAATCAGATGAAGAATCTAGACCTCAAAATACTAACTATCCAA
GAAGCATACTTACCTCCCTCCTCTTAAACAGCAGTCAGAGCTCTGCTTCTGAGGAAACCGTGTTACGATC
TGATGCCCCTGATAGTACAGGAGATCAGCCTGGACTCCATCAAGAAAATTCCTCAAATGGAAAGTCTGAG
TGGTCGGATGCCTCCCAGAAGTCCCCTGTGCATGTCGGAGAGACGAGGAAGGAGGATGACCCCAATGAAG
ACTGGTGTGCTGTTTGTCAAAATGGTGGGGAACTCCTATGCTGTGAGAAATGTCCTAAAGTATTCCATCT
TACTTGTCATGTGCCCACCTTGACAAATTTTCCAAGTGGAGAATGGATCTGTACTTTCTGCCGAGACTTA
TCTAAGCCAGAGGTTGACTATGATTGTGATGTTCCCAGTCACCACTCAGAGAAACGGAAAAGTGAAGGCC
TTACTAAGTTAACGCCAATAGACAAAAGGAAATGTGAACGCCTACTTCTGTTTCTTTACTGCCATGAAAT
GAGCCTGGCTTTCCAAGACCCTGTTCCTCTAACTGTGCCTGATTATTATAAAATAATTAAAAACCCAATG
GACTTGTCAACCATCAAGAAAAGACTTCAGGAGGATTATTGCATGTATACAAAGCCTGAAGACTTTGTAG
CTGATTTTAGATTGATCTTTCAAAACTGTGCTGAATTCAATGAGCCTGATTCTGAAGTAGCCAATGCTGG
TATAAAACTTGAAAGCTATTTTGAAGAACTTCTAAAGAATCTTTATCCAGAAAAAAGGTTTCCTAAGGTA
GAATTCAGGCATGAAGCAGAAGACTGTAAGTTCAGTGACGACTCAGACGATGACTTTGTACAGCCCCGGA
AGAAGCGTCTCAAGAGCACCGAGGATCGCCAGCTGCTTAAGTAA

Translation (1017 aa):
MEVAVEKAAAAAAPAGGPAAAAPSGENEAESRQGPDSESGGEASRLNLLDTCAVCHQNIQSRVPKLLPCL
HSFCQRCLPAPQRYLMLTAPALGSAETPPPAPAPAPAPGSPAGGPSPFATQVGVIRCPVCSQECAERHII
DNFFVKDTTEVPSSTVEKSNQVCTSCEDNAEANGFCVECVEWLCKTCIRAHQRVKFTKDHTVRQKEEVSP
EAVGVTSQRPVFCPFHKKEQLKLYCETCDKLTCRDCQLLEHKEHRYQFIEEAFQNQKVIIDTLITKLMEK
TKYIKYTGNQIQNRIIEINQNQKQVEQDIKVAIFTLMVEINKKGKALLHQLESLAKDHRMKLMQQQQEVA
GLSKQLEHVMHFSKWAVSSGSSTALLYSKRLITYRLRHLLRARCDASPVTNTTIQFHCDPSFWAQNIINL
GSLVIEDKESQPQMPKQNPVVEQSSQPPGGLPSNQLSKFPTQISLAQLRLQHIQQQHPPPRLINFQNHSP
KPNGPVLPPYPQQLRYSPSQNVPRQTTIKPNPLQMAFLAQQAIKQWQISSVQAPPTTASSSSSTPSSPTI
TSAAGYDGKAFSSPMIDLSAPVGGSYNLPSLPDIDCSSTIMLDNIARKDTGVDHAQPRPPSNRTVQSPNS
SVPSPGLAGPVTMTSVHPPIRSPSASSVGSRGSSGSSSKPAGADSTHKVPVVMLEPIRIKQENSGPPENY
DFPVVIVKQESDEESRPQNTNYPRSILTSLLLNSSQSSASEETVLRSDAPDSTGDQPGLHQENSSNGKSE
WSDASQKSPVHVGETRKEDDPNEDWCAVCQNGGELLCCEKCPKVFHLTCHVPTLTNFPSGEWICTFCRDL
SKPEVDYDCDVPSHHSEKRKSEGLTKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLTVPDYYKIIKNPM
DLSTIKKRLQEDYCMYTKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLESYFEELLKNLYPEKRFPKV
EFRHEAEDCKFSDDSDDDFVQPRKKRLKSTEDRQLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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