NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33751.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33751.1 Public Homo sapiens 3 TMEM89 24 110 108 CCDS HistoryNCBI Gene:440955Re-query CCDS DB by CCDS ID:33751.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33751.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330862.4 ENSP00000329557.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330862.4Link to Ensembl Protein Viewer:ENSP00000329557.3Re-query CCDS DB by Nucleotide ID:ENST00000330862Re-query CCDS DB by Protein ID:ENSP00000329557
Original member Current member NCBI NM_001008269.3 NP_001008270.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008269.3Link to Protein Sequence:NP_001008270.1Re-query CCDS DB by Nucleotide ID:NM_001008269Re-query CCDS DB by Protein ID:NP_001008270Link to BLAST:NP_001008270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008270.1 159 A2RUT3 159 100% 0 0

Chromosomal Locations for CCDS 33751.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 48620842 48621027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 48621463 48621756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGCTGCATGTGCTGGCCTCGCTGCCTTTGCTGCTCCTGCTGGTGACGTCTGCCTCCACCCACGCCTGGT
CGAGACCCCTCTGGTACCAGGTGGGGCTGGACTTGCAGCCCTGGGGGTGTCAGCCAAAGAGTGTGGAGGG
CTGTAGGGGTGGCCTGAGCTGTCCTGGCTACTGGCTGGGCCCTGGAGCAAGCCGCATCTACCCCGTGGCT
GCGGTCATGATCACCACCACGATGCTGATGATCTGCCGCAAGATACTGCAGGGGCGGCGGCGCTCACAGG
CCACCAAGGGTGAGCATCCGCAGGTGACCACTGAGCCCTGCGGACCCTGGAAACGGCGGGCCCCAATCTC
AGACCACACCCTGCTCCGTGGGGTCCTGCACATGCTGGATGCCCTCCTGGTCCACATCGAAGGCCACCTA
CGTCATCTAGCCACCCAGCGGCAAATCCAAATAAAGGGGACTTCCACCCAGAGTGGGTGA

Translation (159 aa):
MLHVLASLPLLLLLVTSASTHAWSRPLWYQVGLDLQPWGCQPKSVEGCRGGLSCPGYWLGPGASRIYPVA
AVMITTTMLMICRKILQGRRRSQATKGEHPQVTTEPCGPWKRRAPISDHTLLRGVLHMLDALLVHIEGHL
RHLATQRQIQIKGTSTQSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH