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Report for CCDS38079.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38079.1 Public Mus musculus 2 Lcn5 23 108 98 CCDS HistoryNCBI Gene:13863Re-query CCDS DB by CCDS ID:38079.1Re-query CCDS DB by GeneID:13863See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38079.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028306.12 ENSMUSP00000028306.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028306.12Link to Ensembl Protein Viewer:ENSMUSP00000028306.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028306Re-query CCDS DB by Protein ID:ENSMUSP00000028306
Original member Current member NCBI NM_007947.3 NP_031973.2 Accepted alive Link to Nucleotide Sequence:NM_007947.3Link to Protein Sequence:NP_031973.2Re-query CCDS DB by Nucleotide ID:NM_007947Re-query CCDS DB by Protein ID:NP_031973Link to BLAST:NP_031973.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031973.2 192 A2AJB7-1 192 100% 0 0

Chromosomal Locations for CCDS 38079.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25657981 25658097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25658318 25658454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25660057 25660136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25660636 25660740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25660895 25660996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25661082 25661107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25661543 25661554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGTGCTCAGTTGCTAGGCATATGGAGAGCATCATGCTCTTCACCTTGCTGGGACTGTGTGTGGGGCTGG
CAGCTGGCACAGAGGCTGCAGTGGTGAAGGACTTCGACGTAAACAAGTTTTTAGGCTTCTGGTATGAAAT
TGCCCTTGCCTCCAAGATGGGTGCATACGGCTTGGCACACAAGGAGGAGAAGATGGGAGCCATGGTGGTT
GAGCTGAAAGAGAACCTTCTGGCTCTGACCACCACCTATTACAATGAGGGCCACTGTGTGCTGGAGAAGG
TTGCAGCCACTCAGGTGGACGGTTCAGCGAAGTACAAGGTCACCAGAATATCAGGAGAGAAAGAAGTTGT
TGTTGTAGCCACAGACTACATGACGTATACTGTGATTGATATCACCTCTCTGGTGGCCGGGGCAGTACAT
CGAGCCATGAAACTGTACAGCCGGAGCTTGGACAACAATGGGGAAGCTCTGAATAATTTCCAGAAGATAG
CCTTGAAGCATGGGTTTTCAGAAACAGACATACACATTCTCAAGCATGACTTAACCTGTGTGAACGCATT
GCAATCGGGACAGATCTGA

Translation (192 aa):
MCSVARHMESIMLFTLLGLCVGLAAGTEAAVVKDFDVNKFLGFWYEIALASKMGAYGLAHKEEKMGAMVV
ELKENLLALTTTYYNEGHCVLEKVAATQVDGSAKYKVTRISGEKEVVVVATDYMTYTVIDITSLVAGAVH
RAMKLYSRSLDNNGEALNNFQKIALKHGFSETDIHILKHDLTCVNALQSGQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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