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Report for CCDS28276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28276.1 Public Mus musculus 16 Cxadr 23 108 98 CCDS HistoryNCBI Gene:13052Re-query CCDS DB by CCDS ID:28276.1Re-query CCDS DB by GeneID:13052See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28276.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023572.14 ENSMUSP00000023572.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023572.14Link to Ensembl Protein Viewer:ENSMUSP00000023572.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023572Re-query CCDS DB by Protein ID:ENSMUSP00000023572
Original member Current member NCBI NM_001025192.3 NP_001020363.1 Accepted alive Link to Nucleotide Sequence:NM_001025192.3Link to Protein Sequence:NP_001020363.1Re-query CCDS DB by Nucleotide ID:NM_001025192Re-query CCDS DB by Protein ID:NP_001020363Link to BLAST:NP_001020363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020363.1 365 P97792-1 365 100% 0 0

Chromosomal Locations for CCDS 28276.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 78301832 78301874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78325157 78325323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78328954 78329158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78333362 78333517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78334169 78334291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78334822 78334960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 78336188 78336452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGCGCGCCTACTGTGCTTCGTGCTCTTGTGCGGGATCGCGGATTTCACCAGTGGTTTGAGCATCACTA
CACCCGAACAGAGGATCGAAAAAGCCAAAGGGGAAACTGCGTATCTACCATGCAAGTTTACTCTCAGTCC
CGAAGACCAGGGACCACTGGACATTGAATGGCTGATATCCCCGTCTGATAACCAGATAGTGGATCAAGTG
ATCATTTTGTATTCTGGAGACAAAATTTATGATAACTACTATCCGGATCTGAAAGGACGGGTACATTTTA
CGAGTAACGATGTCAAGTCTGGCGACGCATCTATAAATGTGACCAACCTGCAGCTGTCGGACATTGGCAC
TTACCAGTGCAAAGTGAAGAAAGCCCCTGGGGTTGCAAATAAGAAATTCCTGCTGACCGTTCTTGTTAAG
CCTTCAGGTACAAGATGCTTCGTGGATGGATCGGAAGAGATTGGAAATGACTTCAAGCTAAAATGTGAAC
CCAAGGAAGGCTCCCTTCCACTACAGTTTGAATGGCAGAAACTGTCGGACTCCCAGACAATGCCTACGCC
ATGGCTGGCAGAAATGACGTCACCAGTTATATCTGTGAAGAACGCCAGTTCTGAGTATTCTGGGACATAC
AGCTGCACGGTTCAAAACAGAGTGGGCTCTGACCAGTGTATGCTGCGACTAGACGTTGTCCCACCCTCCA
ACCGAGCCGGAACGATCGCGGGCGCCGTCATAGGGACGCTGCTGGCCCTTGTGCTCATCGGGGCCATCCT
CTTCTGCTGTCACAGGAAACGCAGAGAAGAGAAGTACGAGAAGGAAGTTCATCATGATATCAGGGAAGAT
GTGCCTCCTCCAAAGAGTCGGACATCCACTGCCAGGAGCTATATTGGCAGCAACCATTCCTCCCTGGGAT
CCATGTCCCCCTCTAACATGGAGGGGTATTCCAAGACGCAGTATAACCAAGTCCCCAGTGAAGACTTTGA
ACGTGCGCCTCAGAGCCCGACTCTGGCACCCGCTAAGGTAGCTGCCCCTAATCTCAGTCGAATGGGAGCG
GTTCCTGTGATGATTCCTGCACAGAGCAAGGACGGGTCTATAGTATAG

Translation (365 aa):
MARLLCFVLLCGIADFTSGLSITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQV
IILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK
PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTY
SCTVQNRVGSDQCMLRLDVVPPSNRAGTIAGAVIGTLLALVLIGAILFCCHRKRREEKYEKEVHHDIRED
VPPPKSRTSTARSYIGSNHSSLGSMSPSNMEGYSKTQYNQVPSEDFERAPQSPTLAPAKVAAPNLSRMGA
VPVMIPAQSKDGSIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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