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Report for CCDS26959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26959.1 Public Mus musculus 14 Mat1a 23 108 98 CCDS HistoryNCBI Gene:11720Re-query CCDS DB by CCDS ID:26959.1Re-query CCDS DB by GeneID:11720See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047286.6 ENSMUSP00000044288.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047286.6Link to Ensembl Protein Viewer:ENSMUSP00000044288.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047286Re-query CCDS DB by Protein ID:ENSMUSP00000044288
Original member Current member EBI ENSMUST00000225720.1 ENSMUSP00000153488.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000225720.1Link to Ensembl Protein Viewer:ENSMUSP00000153488.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000225720Re-query CCDS DB by Protein ID:ENSMUSP00000153488
Original member Current member NCBI NM_133653.3 NP_598414.1 Accepted alive Link to Nucleotide Sequence:NM_133653.3Link to Protein Sequence:NP_598414.1Re-query CCDS DB by Nucleotide ID:NM_133653Re-query CCDS DB by Protein ID:NP_598414Link to BLAST:NP_598414.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598414.1 396 Q91X83 396 100% 0 0

Chromosomal Locations for CCDS 26959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 41105591 41105684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41109411 41109488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41111034 41111156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41114217 41114329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41114723 41114866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41120000 41120218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41121290 41121472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41121780 41121913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41122503 41122605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGAATGGACCTGTGGATGGCTTGTGTGACCATTCTCTAAGTGAAGAGGGAGCCTTCATGTTCACATCAG
AATCTGTAGGAGAGGGGCATCCAGATAAGATCTGTGACCAGATTAGTGATGCGGTGCTGGATGCTCACCT
CAAGCAAGACCCCAATGCCAAGGTGGCCTGTGAGACAGTGTGCAAGACAGGTATGGTGCTACTGTGTGGG
GAGATCACCTCAGTGGCCATGGTTGATTACCAGCGGGTGGTGAGAGACACCATCAAGCACATTGGCTATG
ACGACTCTGCCAAGGGCTTTGACTTCAAGACTTGCAATGTGCTAGTGGCTCTGGAGCAACAGTCCCCAGA
TATTGCCCAATGTGTCCACCTAGACAGAAATGAAGAGGATGTTGGTGCAGGAGATCAGGGTCTGATGTTT
GGCTATGCTACTGATGAGACCGAGGAATGCATGCCCCTTACCATCGTGCTCGCTCACAAACTCAACACCC
GGATAGCAGATCTGAGGCGCTCTGGTGTCCTTCCCTGGCTGAGACCTGATTCTAAGACTCAGGTAACAGT
TCAGTACATGCAGGATAATGGTGCAGTCATCCCTGTGCGCATCCACACCATCGTCATCTCTGTGCAACAC
AATGAAGACATCACACTGGAGGCCATGCAAGAGGCCCTGAAAGAGCAGGTGATCAAAGCTGTGGTGCCAG
CCAAGTACCTGGATGAAGATACTGTTTACCACCTGCAGCCAAGTGGGCGGTTTGTTATTGGAGGCCCCCA
GGGGGATGCAGGTGTCACGGGCCGCAAGATTATTGTGGACACATACGGAGGCTGGGGTGCCCATGGTGGT
GGTGCCTTCTCTGGAAAGGACTACACCAAGGTGGACCGCTCAGCAGCTTATGCTGCCCGCTGGGTGGCCA
AGTCCCTGGTAAAGGCTGGGCTCTGCCGGAGAGTGCTTGTTCAGGTGTCCTATGCCATTGGTGTGGCAGA
ACCTCTGTCCATTTCCATCTTCACCTACGGGACCTCCAATAAGACTGAGCGGGAGCTGCTAGAGGTGGTG
AACAAGAACTTTGACCTTCGGCCTGGTGTTATTGTCAGGGACTTGGATCTGAAAAAACCCATCTACCAGA
AGACTGCGTGCTACGGCCATTTCGGGAGAAGCGAGTTTCCCTGGGAGGTCCCCAAGAAGCTTGTGTTTTA
G

Translation (396 aa):
MNGPVDGLCDHSLSEEGAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCG
EITSVAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVGAGDQGLMF
GYATDETEECMPLTIVLAHKLNTRIADLRRSGVLPWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQH
NEDITLEAMQEALKEQVIKAVVPAKYLDEDTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGG
GAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSNKTERELLEVV
NKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPKKLVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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