NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25356.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25356.1 Public Mus musculus 11 Gsdma3 23 108 98 CCDS HistoryNCBI Gene:450219Re-query CCDS DB by CCDS ID:25356.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25356.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073295.2 ENSMUSP00000073022.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073295.2Link to Ensembl Protein Viewer:ENSMUSP00000073022.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073295Re-query CCDS DB by Protein ID:ENSMUSP00000073022
Original member Current member NCBI NM_001007461.2 NP_001007462.1 Accepted alive Link to Nucleotide Sequence:NM_001007461.2Link to Protein Sequence:NP_001007462.1Re-query CCDS DB by Nucleotide ID:NM_001007461Re-query CCDS DB by Protein ID:NP_001007462Link to BLAST:NP_001007462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007462.1 464 Q5Y4Y6 464 100% 0 0

Chromosomal Locations for CCDS 25356.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98629352 98629565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98629759 98629939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98631141 98631306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98632347 98632443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98632901 98632996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98633314 98633340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98635206 98635360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98635825 98635939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98637528 98637601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98637820 98638089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGCCTGTGTTTGAGGATGTCACCCGGGCCCTGGTTAGAGAGCTGAACCCTCGAGGGGATCTGACACCCC
TAGACAGCCTCATCGACTTCAAACACTTTCGTCCCTTCTGCCTGGTGCTGAGGAAGAGGAAGAGCACATT
GTTCTGGGGAGCCCGCTATGTGCGCACCGACTACACTCTCCTGGATTTGCTGGAGCCGGGCAGCTCCCCC
TCAGATCTGACAGACAGTGGCAACTTTAGCTTTAAGAATATGCTGGATGTCCAAGTACAGGGACTTGTGG
AAGTGCCAAAGACAGTGAAGGTAAAGGGGACTGCGGGTCTGTCACAAAGCAGCACACTGGAGGTGCAGAC
ACTCAGCGTGGCTCCCTCGGCTCTGGAGAACTTGAAGAAGGAGAGGAAACTGTCAGCAGACCACTCGTTC
CTGAACGAGATGAGGTATCATGAGAAGAACCTGTATGTGGTGATGGAGGCAGTAGAAGCCAAGCAGGAAG
TTACTGTGGAGCAAACTGGCAACGCAAATGCCATCTTCTCTCTCCCCAGCTTGGCTCTACTGGGACTACA
GGGATCCTTGAACAACAACAAGGCTGTAACCATCCCCAAGGGCTGTGTCCTGGCCTATCGAGTGAGACTA
CTGAGAGTCTTTTTGTTCAATCTTTGGGATATTCCGTACATTTGCAATGACAGCATGCAAACCTTCCCTA
AGATCAGGCGTGTACCTTGCAGTGCCTTCATATCTCCTACCCAGATGATATCTGAAGAGCCAGAAGAAGA
GAAGCTCATTGGGGAGATGCACGAAGACTTCAAGACATTAAAGGAAGAGGTTCAGCGAGAGACTCAAGAA
GTGGAGAAGTTGAGTCCAGTGGGTCGAAGCTCCCTACTCACTTCCCTCAGCCATCTCCTAGGAAAGAAGA
AAGAGCTCCAGGACCTTGAGCAGAAGCTTGAAGGGGCTTTAGACAAGGGTCAGAAAGTGACCCTGGAAGC
ACTCCCCAAAGATGTCCTGCTGTCAAAGGACGCTATGGATGCCATCCTCTACTTCCTCGGGGCTCTGACA
GAGCTAACTGAAGAACAACTGAAGATTCTAGTAAAATCCTTGGAGAAAAAGATCTTACCAGTGCAACTGA
AGCTGGTTGAAAGCACCTTGGAGCAGAACTTCCTGCAAGATAAAGAGGGTGTTTTCCCCCTGCAACCTGA
TCTGCTCTCCTCCCTCGGGGAGGAGGAACTGACCCTAACGGAAGCACTGGTGGGACTAAGCGGCCTGGAA
GTCCAGAGATCAGGCCCCCAGTACGCGTGGGATCCAGACACTCGCCACAACCTTTGTGCCCTCTATGCTG
GCCTCTCCCTCCTTCACCTGCTAAGCAGGAAATCTAATGCACTTACTTATTGTGCTCTATCTTAA

Translation (464 aa):
MPVFEDVTRALVRELNPRGDLTPLDSLIDFKHFRPFCLVLRKRKSTLFWGARYVRTDYTLLDLLEPGSSP
SDLTDSGNFSFKNMLDVQVQGLVEVPKTVKVKGTAGLSQSSTLEVQTLSVAPSALENLKKERKLSADHSF
LNEMRYHEKNLYVVMEAVEAKQEVTVEQTGNANAIFSLPSLALLGLQGSLNNNKAVTIPKGCVLAYRVRL
LRVFLFNLWDIPYICNDSMQTFPKIRRVPCSAFISPTQMISEEPEEEKLIGEMHEDFKTLKEEVQRETQE
VEKLSPVGRSSLLTSLSHLLGKKKELQDLEQKLEGALDKGQKVTLEALPKDVLLSKDAMDAILYFLGALT
ELTEEQLKILVKSLEKKILPVQLKLVESTLEQNFLQDKEGVFPLQPDLLSSLGEEELTLTEALVGLSGLE
VQRSGPQYAWDPDTRHNLCALYAGLSLLHLLSRKSNALTYCALS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH