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Report for CCDS3769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3769.1 Public Homo sapiens 4 EDNRA 24 110 108 CCDS HistoryNCBI Gene:1909Re-query CCDS DB by CCDS ID:3769.1Re-query CCDS DB by GeneID:1909See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3769.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324300.10 ENSP00000315011.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324300.10Link to Ensembl Protein Viewer:ENSP00000315011.5Re-query CCDS DB by Nucleotide ID:ENST00000324300Re-query CCDS DB by Protein ID:ENSP00000315011
Original member Current member EBI ENST00000651419.1 ENSP00000498969.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651419.1Link to Ensembl Protein Viewer:ENSP00000498969.1Re-query CCDS DB by Nucleotide ID:ENST00000651419Re-query CCDS DB by Protein ID:ENSP00000498969
Original member Current member NCBI NM_001957.4 NP_001948.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001957.4Link to Protein Sequence:NP_001948.1Re-query CCDS DB by Nucleotide ID:NM_001957Re-query CCDS DB by Protein ID:NP_001948Link to BLAST:NP_001948.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001948.1 427 P25101-1 427 100% 0 0

Chromosomal Locations for CCDS 3769.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 147485682 147486101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147519851 147519978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147532506 147532704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147535877 147536029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147539817 147539950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147540377 147540485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147542478 147542618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGGAAACCCTTTGCCTCAGGGCATCCTTTTGGCTGGCACTGGTTGGATGTGTAATCAGTGATAATCCTG
AG
AGATACAGCACAAATCTAAGCAATCATGTGGATGATTTCACCACTTTTCGTGGCACAGAGCTCAGCTT
C
CTGGTTACCACTCATCAACCCACTAATTTGGTCCTACCCAGCAATGGCTCAATGCACAACTATTGCCCA
CAG
CAGACTAAAATTACTTCAGCTTTCAAATACATTAACACTGTGATATCTTGTACTATTTTCATCGTGG
GA
ATGGTGGGGAATGCAACTCTGCTCAGGATCATTTACCAGAACAAATGTATGAGGAATGGCCCCAACGC
G
CTGATAGCCAGTCTTGCCCTTGGAGACCTTATCTATGTGGTCATTGATCTCCCTATCAATGTATTTAAG
CTG
CTGGCTGGGCGCTGGCCTTTTGATCACAATGACTTTGGCGTATTTCTTTGCAAGCTGTTCCCCTTTT
TG
CAGAAGTCCTCGGTGGGGATCACCGTCCTCAACCTCTGCGCTCTTAGTGTTGACAGGTACAGAGCAGT
T
GCCTCCTGGAGTCGTGTTCAGGGAATTGGGATTCCTTTGGTAACTGCCATTGAAATTGTCTCCATCTGG
ATC
CTGTCCTTTATCCTGGCCATTCCTGAAGCGATTGGCTTCGTCATGGTACCCTTTGAATATAGGGGTG
AA
CAGCATAAAACCTGTATGCTCAATGCCACATCAAAATTCATGGAGTTCTACCAAGATGTAAAGGACTG
G
TGGCTCTTCGGGTTCTATTTCTGTATGCCCTTGGTGTGCACTGCGATCTTCTACACCCTCATGACTTGT
GAG
ATGTTGAACAGAAGGAATGGCAGCTTGAGAATTGCCCTCAGTGAACATCTTAAGCAGCGTCGAGAAG
TG
GCAAAAACAGTTTTCTGCTTGGTTGTAATTTTTGCTCTTTGCTGGTTCCCTCTTCATTTAAGCCGTAT
A
TTGAAGAAAACTGTGTATAACGAGATGGACAAGAACCGATGTGAATTACTTAGTTTCTTACTGCTCATG
GAT
TACATCGGTATTAACTTGGCAACCATGAATTCATGTATAAACCCCATAGCTCTGTATTTTGTGAGCA
AG
AAATTTAAAAATTGTTTCCAGTCATGCCTCTGCTGCTGCTGTTACCAGTCCAAAAGTCTGATGACCTC
G
GTCCCCATGAACGGAACAAGCATCCAGTGGAAGAACCACGATCAAAACAACCACAACACAGACCGGAGC
AGC
CATAAGGACAGCATGAACTGA


Translation (427 aa):
METLCLRASFWLALVGCVISDNPERYSTNLSNHVDDFTTFRGTELSFLVTTHQPTNLVLPSNGSMHNYCP
Q
QTKITSAFKYINTVISCTIFIVGMVGNATLLRIIYQNKCMRNGPNALIASLALGDLIYVVIDLPINVFK

L
LAGRWPFDHNDFGVFLCKLFPFLQKSSVGITVLNLCALSVD
RYRAVASWSRVQGIGIPLVTAIEIVSIW
I
LSFILAIPEAIGFVMVPFEYRGEQHKTCMLNATSKFME
FYQDVKDWWLFGFYFCMPLVCTAIFYTLMTC
E
MLNRRNGSLRIALSEHLKQ
RREVAKTVFCLVVIFALCWFPLHLSRILKKTVYNEMDKNRCELLSFLLLM
D
YIGINLATMNSCINPIALYFVSKKFKNCFQ
SCLCCCCYQSKSLMTSVPMNGTSIQWKNHDQNNHNTDRS
S
HKDSMN




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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