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Report for CCDS12190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12190.1 Public Homo sapiens 19 SNAPC2 24 110 108 CCDS HistoryNCBI Gene:6618Re-query CCDS DB by CCDS ID:12190.1Re-query CCDS DB by GeneID:6618See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000221573.11 ENSP00000221573.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000221573.11Link to Ensembl Protein Viewer:ENSP00000221573.5Re-query CCDS DB by Nucleotide ID:ENST00000221573Re-query CCDS DB by Protein ID:ENSP00000221573
Original member Current member NCBI NM_003083.4 NP_003074.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003083.4Link to Protein Sequence:NP_003074.1Re-query CCDS DB by Nucleotide ID:NM_003083Re-query CCDS DB by Protein ID:NP_003074Link to BLAST:NP_003074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003074.1 334 Q13487 334 100% 0 0

Chromosomal Locations for CCDS 12190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7920367 7920549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7921423 7921542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7921705 7921773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7922035 7922347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7922445 7922764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGAAGCCACCTCCCAGGCGGCGAGCGGCCCCGGCGCGCTATCTGGGCGAGGTGACCGGTCCCGCGACCT
GGAGCGCTCGCGAGAAGCGGCAGCTAGTGCGACTCCTGCAGGCGCGGCAGGGCCAGCCGGAGCCGGACGC
CACCGAGCTGGCCCGGGAGCTGCGGGGCCGGAGCGAGGCTGAGATCCGGGTCTTCCTCCAGCAGCTCAAG
GGCCGCGTAGCCCGGGAGGCCATTCAGAAAGTGCATCCGGGTGGCCTTCAGGGACCAAGGCGCCGGGAGG
CACAGCCCCCAGCCCCCATAGAGGTCTGGACGGATCTGGCTGAGAAGATAACAGGGCCACTGGAAGAAGC
CCTGGCAGTGGCTTTCTCGCAGGTGCTCACCATCGCGGCCACGGAACCGGTCACCCTCCTGCACTCCAAG
CCCCCCAAGCCCACGCAGGCCCGTGGAAAGCCTTTGCTCCTGAGCGCCCCTGGAGGACAGGAAGACCCCG
CCCCTGAAATACCTAGCTCTGCCCCTGCTGCACCTAGCTCCGCACCCAGGACTCCTGACCCTGCCCCTGA
GAAACCTTCTGAGTCGTCGGCTGGTCCCTCCACTGAAGAAGACTTTGCTGTGGACTTTGAGAAGATCTAC
AAGTACTTGTCCTCTGTCTCCCGAAGTGGCCGCAGCCCCGAGCTCTCAGCAGCTGAGTCCGCTGTGGTCC
TCGACCTGCTCATGTCACTTCCAGAGGAGCTGCCACTCCTGCCCTGCACAGCCCTGGTTGAGCATATGAC
GGAGACGTACCTACGCCTGACAGCCCCCCAGCCCATTCCCGCTGGAGGGAGCCTGGGGCCTGCAGCAGAA
GGGGATGGGGCTGGCTCCAAGGCACCAGAGGAGACCCCCCCAGCCACCGAGAAGGCCGAGCACAGCGAAC
TGAAATCGCCTTGGCAAGCAGCTGGGATCTGTCCCCTGAACCCGTTCCTGGTGCCCCTGGAGCTTCTGGG
TCGGGCAGCCACCCCTGCCAGGTGA

Translation (334 aa):
MKPPPRRRAAPARYLGEVTGPATWSAREKRQLVRLLQARQGQPEPDATELARELRGRSEAEIRVFLQQLK
GRVAREAIQKVHPGGLQGPRRREAQPPAPIEVWTDLAEKITGPLEEALAVAFSQVLTIAATEPVTLLHSK
PPKPTQARGKPLLLSAPGGQEDPAPEIPSSAPAAPSSAPRTPDPAPEKPSESSAGPSTEEDFAVDFEKIY
KYLSSVSRSGRSPELSAAESAVVLDLLMSLPEELPLLPCTALVEHMTETYLRLTAPQPIPAGGSLGPAAE
GDGAGSKAPEETPPATEKAEHSELKSPWQAAGICPLNPFLVPLELLGRAATPAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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