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Report for CCDS9311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9311.1 Public Homo sapiens 13 PABPC3 24 110 108 CCDS HistoryNCBI Gene:5042Re-query CCDS DB by CCDS ID:9311.1Re-query CCDS DB by GeneID:5042See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9311.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281589.5 ENSP00000281589.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281589.5Link to Ensembl Protein Viewer:ENSP00000281589.3Re-query CCDS DB by Nucleotide ID:ENST00000281589Re-query CCDS DB by Protein ID:ENSP00000281589
Original member Current member NCBI NM_030979.3 NP_112241.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030979.3Link to Protein Sequence:NP_112241.2Re-query CCDS DB by Nucleotide ID:NM_030979Re-query CCDS DB by Protein ID:NP_112241Link to BLAST:NP_112241.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112241.2 631 Q9H361 631 100% 0 0

Chromosomal Locations for CCDS 9311.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 25096199 25098094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1896 nt):
ATGAACCCCAGCACCCCCAGCTACCCAACGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACTG
AGGCGATGCTCTACGAGAAGTTCAGCCCGGCAGGGCCCATCCTCTCCATCCGGATCTGCAGGGACTTGAT
CACCAGCGGCTCCTCCAACTACGCGTATGTGAACTTCCAGCATACGAAGGACGCGGAGCATGCTCTGGAC
ACCATGAATTTTGATGTTATAAAGGGCAAGCCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTC
GAAAAAGTGGAGTGGGCAACATATTCGTTAAAAATCTGGATAAGTCCATTAATAATAAAGCACTGTATGA
TACAGTTTCTGCTTTTGGTAACATCCTTTCGTGTAACGTGGTTTGTGATGAAAATGGTTCCAAGGGTTAT
GGATTTGTACACTTTGAGACACACGAAGCAGCTGAAAGAGCTATTAAAAAAATGAACGGAATGCTCCTAA
ATGGTCGCAAAGTATTTGTTGGACAATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCTAGGGC
AAAAGAGTTCCCCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTC
TTTGGCAAGTTCGGGCCCGCCTTAAGTGTGAAAGTAATGACCGATGAAAGTGGAAAATCCAAAGGATTTG
GATTTGTAAGCTTTGAAAGGCATGAAGATGCACAGAAAGCTGTAGATGAGATGAATGGAAAGGAGCTCAA
TGGAAAACAAATTTACGTTGGTCGAGCTCAGAAAAAAGTGGAACGGCAGACGGAACTTAAGCGCACATTT
GAACAGATGAAGCAAGATAGGATCACCAGATACCAGGTTGTTAATCTTTATGTGAAAAATCTTGATGATG
GTATTGATGATGAACGTCTCCGGAAAGCGTTTTCTCCATTTGGTACAATCACTAGTGCAAAGGTTATGAT
GGAAGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCACTAAAGCAGTT
ACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCTTACCTCACTAACGAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTGCCCAACCAGCGAGC
ACCTCCTTCAGGTTACTTCATGACAGCTGTCCCACAGACTCAGAACCATGCTGCATACTATCCTCCTAGC
CAAATTGCTCGACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATA
AGCCCAGTGCTATCCGCCCAGGTGCTCCTAGAGTACCATTTAGTACTATGAGACCAGCTTCTTCACAGGT
TCCACGAGTCATGTCAACGCAGCGTGTTGCTAACACATCAACACAGACAGTGGGTCCACGTCCTGCAGCT
GCTGCTGCTGCTGCAGCTACCCCTGCTGTGCGCACGGTTCCACGGTATAAATATGCTGCGGGAGTTCGCA
ATCCTCAGCAACATCGTAATGCACAGCCACAAGTTACAATGCAACAGCTTGCTGTTCATGTACAAGGTCA
GGAAACTTTGACTGCCTCCAGGTTGGCATCTGCCCCTCCTCAAAAGCAAAAGCAAATGTTAGGTGAACGG
CTCTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGGAAAATCACTGGCATGTTGTTGGAGATTG
ATAATTCAGAACTTCTTTATATGCTCGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGC
TGTACTACAAGCCCACCAAGCTAAAGAGGCTACCCAGAAAGCAGTTAACAGTGCTACCGGTGTTCCAACT
GTTTAA

Translation (631 aa):
MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD
TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGY
GFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDL
FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTF
EQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV
TEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPPS
QIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAA
AAAAAATPAVRTVPRYKYAAGVRNPQQHRNAQPQVTMQQLAVHVQGQETLTASRLASAPPQKQKQMLGER
LFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKAVNSATGVPT
V


Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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