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Report for CCDS27508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27508.1 Public Mus musculus 15 Oc90 23 108 98 CCDS HistoryNCBI Gene:18256Re-query CCDS DB by CCDS ID:27508.1Re-query CCDS DB by GeneID:18256See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060522.10 ENSMUSP00000062865.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060522.10Link to Ensembl Protein Viewer:ENSMUSP00000062865.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060522Re-query CCDS DB by Protein ID:ENSMUSP00000062865
Original member NCBI NM_010953.2 NP_035083.1 Updated not alive Link to Nucleotide Sequence:NM_010953.2Link to Protein Sequence:NP_035083.1Re-query CCDS DB by Nucleotide ID:NM_010953Re-query CCDS DB by Protein ID:NP_035083
Current member NCBI NM_010953.3 NP_035083.1 Accepted alive Link to Nucleotide Sequence:NM_010953.3Link to Protein Sequence:NP_035083.1Re-query CCDS DB by Nucleotide ID:NM_010953Re-query CCDS DB by Protein ID:NP_035083Link to BLAST:NP_035083.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035083.1 485 Q9Z0L3-1 485 100% 0 0

Chromosomal Locations for CCDS 27508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 65876298 65876587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65878727 65878833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65881504 65881675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65882525 65882638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65883821 65883874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65887582 65887629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65888096 65888146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65889408 65889446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65889585 65889713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65892352 65892464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65897666 65897840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65900591 65900647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65901503 65901565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 65908960 65909005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGATTATGCTGCTCATGGTCGGTATGCTGATGGCCCCCTGTGTTGGGGCCCATGCTCTGGACACACCAA
ATCCCCAGGAATTGCCTCCAGGACTGTCAAAAAATATAAATATCACTTTCTTCAATGGAGTGTTTAAAAA
CGTGGAAAGTGTGGCTGAAATTTTTGACTGCCTAGGTTCCCACTTCACCTGGCTGCAGGCTGTCTTCACC
AACTTCCCGCTGCTCCTCCAGTTTGTAAACAGTATGAGGTGTGTAACTGGCCTCTGCCCCCGGGACTTTG
AAGACTATGGTTGTGCCTGTAGGTTTGAGATGGAAGGGATGCCTGTGGACGAGTCTGATATCTGCTGCTT
CCAGCATCGCAGGTGCTATGAGGAAGCTGTTGAGATGGACTGTCTCCAAGACCCTGCCAAGCTCAGTGCA
GATGTGGATTGCACCAACAAACAGATCACATGTGAGTCCGAGGATCCCTGTGAGCGTCTACTGTGTACGT
GTGACAAGGCTGCTGTGGAGTGCCTGGCTCAGTCTGGCATCAACTCCTCCCTGAACTTCCTGGATGCTTC
CTTCTGCCTCCCTCAGACTCCAGAGACAACTAGTGGGAAGGCTGCAACACTGTTGCCTAGAGGGATTCCT
GAAAAGCCCACAGATACCAGTCAGATAGCCCTGTCAGGAGAAGTGGCTGGTGAGGTGAGAGCAGACACAC
TAACAACCCTCTCCAGAACAAAGTCTGTTCAAGATCTTCAAGACACACAAGCTTCTAGGACCACATCAAG
TCCAGGATCTGCAGAGATTATTGCCCTAGCCAAAGGTACAACCCACTCTGCTGGCATCAAACCACTGAGG
TTGGGAGTCTCATCTGTTGACAATGGTTCCCAGGAAGCAGCTGGAAAAGCCTGTGACAGATTGGCCTTCG
TGCATCTGGGTGATGGGGACAGCATGACGGCCATGCTGCAGCTTGGAGAGATGCTCTTCTGTCTAACATC
CCATTGCCCAGAGGAATTTGAAACTTACGGCTGCTACTGTGGAAGAGAAGGAAGAGGAGAGCCAAGGGAC
ACCCTGGATAGGTGCTGTCTGTCCCATCACTGCTGTTTGGAGCAGATGAGACAAGTGGGCTGCCTCCATG
GAAGGCGTTCTCAGTCATCTGTGGTATGTGAAGACCACATGGCCAAATGTGTGGGGCAGAGCCTGTGTGA
GAAGCTACTATGTGCCTGTGACCAGATGGCAGCTGAGTGCATGGCCTCTGCCTTCTTTAATCAAAGCCTC
AAGTCACCAGACGGAGCCGAGTGTCAAGGCGAGCCTGTGTCCTGTGAGGATGGCATGCTCCAGGGCACCT
TGGCCTCTTCTGTGGACTCCAGTTCTGAGGAGAATAGTGAGGAAGCTCCACCGCAGATGGAACGCCTAAG
AAGATTTCTGGAAAAGCCTCCTGGTCCCTTGGGGGCCAGACCCCTCGGTGGGAAATAA

Translation (485 aa):
MIMLLMVGMLMAPCVGAHALDTPNPQELPPGLSKNINITFFNGVFKNVESVAEIFDCLGSHFTWLQAVFT
NFPLLLQFVNSMRCVTGLCPRDFEDYGCACRFEMEGMPVDESDICCFQHRRCYEEAVEMDCLQDPAKLSA
DVDCTNKQITCESEDPCERLLCTCDKAAVECLAQSGINSSLNFLDASFCLPQTPETTSGKAATLLPRGIP
EKPTDTSQIALSGEVAGEVRADTLTTLSRTKSVQDLQDTQASRTTSSPGSAEIIALAKGTTHSAGIKPLR
LGVSSVDNGSQEAAGKACDRLAFVHLGDGDSMTAMLQLGEMLFCLTSHCPEEFETYGCYCGREGRGEPRD
TLDRCCLSHHCCLEQMRQVGCLHGRRSQSSVVCEDHMAKCVGQSLCEKLLCACDQMAAECMASAFFNQSL
KSPDGAECQGEPVSCEDGMLQGTLASSVDSSSEENSEEAPPQMERLRRFLEKPPGPLGARPLGGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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