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Report for CCDS7986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7986.1 Public Homo sapiens 11 MS4A7 24 110 108 CCDS HistoryNCBI Gene:58475Re-query CCDS DB by CCDS ID:7986.1Re-query CCDS DB by GeneID:58475See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7986.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358246.5 ENSP00000350983.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358246.5Link to Ensembl Protein Viewer:ENSP00000350983.1Re-query CCDS DB by Nucleotide ID:ENST00000358246Re-query CCDS DB by Protein ID:ENSP00000350983
Original member Current member EBI ENST00000534016.5 ENSP00000434637.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534016.5Link to Ensembl Protein Viewer:ENSP00000434637.1Re-query CCDS DB by Nucleotide ID:ENST00000534016Re-query CCDS DB by Protein ID:ENSP00000434637
Original member Current member NCBI NM_206938.2 NP_996821.1 Accepted alive Link to Nucleotide Sequence:NM_206938.2Link to Protein Sequence:NP_996821.1Re-query CCDS DB by Nucleotide ID:NM_206938Re-query CCDS DB by Protein ID:NP_996821Link to BLAST:NP_996821.1
Original member Current member NCBI NM_206940.2 NP_996823.1 Accepted alive Link to Nucleotide Sequence:NM_206940.2Link to Protein Sequence:NP_996823.1Re-query CCDS DB by Nucleotide ID:NM_206940Re-query CCDS DB by Protein ID:NP_996823Link to BLAST:NP_996823.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996821.1 195 Q9GZW8-2 195 100% 0 0
NP_996823.1 195 Q9GZW8-2 195 100% 0 0

Chromosomal Locations for CCDS 7986.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60383142 60383288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60386717 60386773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60389390 60389596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60392685 60392786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60393787 60393861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGCTATTACAATCCCAAACCATGGGGGTTTCTCACAGCTTTACACCAAAGGGCATCACTATCCCTCAAA
GAGAGAAACCTGGACACATGTACCAAAACGAAGATTACCTGCAGAACGGGCTGCCAACAGAAACCACCGT
TCTTGGGTTTGGCATTACTGGATCCCTCTCAATTATCTCTGGAAAACAATCAACTAAGCCCTTTGACCTG
AGCAGCTTGACCTCAAATGCAGTGAGTTCTGTTACTGCAGGAGCAGGCCTCTTCCTCCTTGCTGACAGCA
TGGTAGCCCTGAGGACTGCCTCTCAACATTGTGGCTCAGAAATGGATTATCTATCCTCATTGCCTTATTC
GGAGTACTATTATCCAATATATGAAATCAAAGATTGTCTCCTGACCAGTGTCAGTTTAACAGGTGTCCTA
GTGGTGATGCTCATCTTCACTGTGCTGGAGCTCTTATTAGCTGCATACAGTTCTGTCTTTTGGTGGAAAC
AGCTCTACTCCAACAACCCTGGGAGTTCATTTTCCTCGACCCAGTCACAAGATCATATCCAACAGGTCAA
AAAGAGTTCTTCACGGTCTTGGATATAA

Translation (195 aa):
MLLQSQTMGVSHSFTPKGITIPQREKPGHMYQNEDYLQNGLPTETTVLGFGITGSLSIISGKQSTKPFDL
SSLTSNAVSSVTAGAGLFLLADSMVALRTASQHCGSEMDYLSSLPYSEYYYPIYEIKDCLLTSVSLTGVL
VVMLIFTVLELLLAAYSSVFWWKQLYSNNPGSSFSSTQSQDHIQQVKKSSSRSWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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