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Report for CCDS8090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8090.1 Public Homo sapiens 11 SNX15 24 110 108 CCDS HistoryNCBI Gene:29907Re-query CCDS DB by CCDS ID:8090.1Re-query CCDS DB by GeneID:29907See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8090.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000352068.5 ENSP00000316410.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000352068.5Link to Ensembl Protein Viewer:ENSP00000316410.5Re-query CCDS DB by Nucleotide ID:ENST00000352068Re-query CCDS DB by Protein ID:ENSP00000316410
Original member Current member NCBI NM_147777.4 NP_680086.2 Accepted alive Link to Nucleotide Sequence:NM_147777.4Link to Protein Sequence:NP_680086.2Re-query CCDS DB by Nucleotide ID:NM_147777Re-query CCDS DB by Protein ID:NP_680086Link to BLAST:NP_680086.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_680086.2 256 Q9NRS6-2 256 100% 0 0

Chromosomal Locations for CCDS 8090.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 65027538 65027636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65032168 65032203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65032431 65032551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65034847 65034962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65035059 65035206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65035520 65035663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 65039686 65039792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (771 nt):
ATGTCCCGCCAGGCGAAGGATGACTTCCTGCGGCACTACACAGTGTCGGACCCCAGGACTCACCCCAAGG
GCTACACCGAGTACAAAGTAACCGCGCAGTTCATCTCAAAGAAGGACCCAGAGGATGTCAAAGAGGTGGT
GGTCTGGAAGCGGTACAGCGACTTCCGCAAGCTGCATGGAGACCTGGCCTACACCCACCGCAACCTCTTC
CGCCGCCTCGAGGAGTTCCCTGCTTTCCCCCGGGCCCAGGTGTTTGGCCGGTTTGAAGCCTCAGTGATCG
AGGAGCGGCGAAAGGGGGCAGAGGACCTGCTTCGCTTCACTGTGCACATACCTGCGCTCAACAACAGCCC
CCAGCTCAAGGAGTTCTTCCGGGGTGGGGAGGTGACCCGACCCTTGGAGGTGTCCAGGGACCTACACATC
CTGCCACCCCCTCTGATCCCCACCCCGCCCCCTGATGACCCCCGGCTATCCCAACTGCTCCCTGCAGAAA
GGAGGGGCCTCGAGGAATTGGAGGTGCCAGTGGACCCCCCACCATCCAGCCCTGCCCAGGAGGCCCTGGA
TCTCCTCTTTAACTGTGAGAGCACCGAGGAGGCATCTGGTTCCCCTGCCCGAGGCCCCCTCACCGAGGCT
GAGCTTGCCCTCTTCGACCCCTTCTCCAAGGAAGGTGACCCGTTGCCTGCCCGCCAGGAAGGTGTGAAGA
AGAAGGCAGCTGAGTACCTGAAGCGGGCAGAGGAGATCCTGCGCCTGCACCTGTCTCAACTCCCACCCTA
A

Translation (256 aa):
MSRQAKDDFLRHYTVSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLF
RRLEEFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLKEFFRGGEVTRPLEVSRDLHI
LPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSSPAQEALDLLFNCESTEEASGSPARGPLTEA
ELALFDPFSKEGDPLPARQEGVKKKAAEYLKRAEEILRLHLSQLPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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