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Report for CCDS964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
964.1 Public Homo sapiens 1 ENSA 24 110 108 CCDS HistoryNCBI Gene:2029Re-query CCDS DB by CCDS ID:964.1Re-query CCDS DB by GeneID:2029See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 964.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513281.5 ENSP00000422343.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513281.5Link to Ensembl Protein Viewer:ENSP00000422343.1Re-query CCDS DB by Nucleotide ID:ENST00000513281Re-query CCDS DB by Protein ID:ENSP00000422343
Original member Current member NCBI NM_207047.2 NP_996930.1 Accepted alive Link to Nucleotide Sequence:NM_207047.2Link to Protein Sequence:NP_996930.1Re-query CCDS DB by Nucleotide ID:NM_207047Re-query CCDS DB by Protein ID:NP_996930Link to BLAST:NP_996930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996930.1 113 O43768-6 113 100% 0 0

Chromosomal Locations for CCDS 964.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 150625638 150625808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150627467 150627592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 150629061 150629105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGGCTGGTGGTCTTGGGTGTGATGTGTGTTATTGGTTTGTAGAGGACACGCAGGAGAAAGAAGGTATTC
TGCCTGAGAGAGCTGAAGAGGCAAAGCTAAAGGCCAAATACCCAAGCCTAGGACAAAAGCCTGGAGGCTC
CGACTTCCTCATGAAGAGACTCCAGAAAGGGCAAAAGTACTTTGACTCAGGAGACTACAACATGGCCAAA
GCCAAGATGAAGAATAAGCAGCTGCCAAGTGCAGGACCAGACAAGAACCTGGTGACTGGTGATCACATCC
CCACCCCACAGGATCTGCCCCAGAGAAAGTCCTCGCTCGTCACCAGCAAGCTTGCGGGGTAA

Translation (113 aa):
MAGGLGCDVCYWFVEDTQEKEGILPERAEEAKLKAKYPSLGQKPGGSDFLMKRLQKGQKYFDSGDYNMAK
AKMKNKQLPSAGPDKNLVTGDHIPTPQDLPQRKSSLVTSKLAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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