NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23971.1 Public Mus musculus 10 Or7a42 23 108 98 CCDS HistoryNCBI Gene:18372Re-query CCDS DB by CCDS ID:23971.1Re-query CCDS DB by GeneID:18372See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081571.1 ENSMUSP00000080282.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081571.1Link to Ensembl Protein Viewer:ENSMUSP00000080282.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000081571Re-query CCDS DB by Protein ID:ENSMUSP00000080282
Original member Current member EBI ENSMUST00000203851.1 ENSMUSP00000144916.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203851.1Link to Ensembl Protein Viewer:ENSMUSP00000144916.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203851Re-query CCDS DB by Protein ID:ENSMUSP00000144916
Original member Current member EBI ENSMUST00000214952.1 ENSMUSP00000148856.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214952.1Link to Ensembl Protein Viewer:ENSMUSP00000148856.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214952Re-query CCDS DB by Protein ID:ENSMUSP00000148856
Original member Current member NCBI NM_207201.1 NP_997084.1 Accepted alive Link to Nucleotide Sequence:NM_207201.1Link to Protein Sequence:NP_997084.1Re-query CCDS DB by Nucleotide ID:NM_207201Re-query CCDS DB by Protein ID:NP_997084Link to BLAST:NP_997084.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997084.1 310 Q60892 310 100% 0 0

Chromosomal Locations for CCDS 23971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78955207 78956139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAATCAGGCAACAGCACAAGAAGAATTCCAAGTTTTTTTCTTCTTGGATTTTCAGAAAACCCACACC
TTCAATTCCTCATTTTTGTACTGTTCCTTTCCATGTACCTGGTAACAGTGCTTGGGAACCTGCTCATCAT
CATGGTCATCATCACACAGTCTCCCCTGCACACACCCATGTACTTCTTCCTTGCTAACCTGTCCTTTGTG
GACATCTGTTTCACCTCCACCACTGTCCCAAAGATGCTGGTAAATATACAGACTCAAAGCAAGGCCATTA
CATATGCAGACTGTATTAGCCAGATGTCTGTCTTCTTGGTTTTTGCAGAATTGGACAACTTTCTCCTGGC
TGTGATGGCCTATGACCGATATGTGGCTATCTGTCACCCATTGTATTACACATTCATTGTTAACCAACAT
CTCTGTATACTGATGGTTCTGCTGTCCTGGGTTGTTAGCATCCTACATGCCTTCTTACAGAGCTCAATTG
TGCTACAGTTGACCTTTTGTGGAGATGTAAAAATTCCCCACTTCTTCTGTGAGCTTAACCAGCTGTCTCA
ACTCACATGTTTAGACAGCTTATCAAGCCACCTCATAATGAATCTTGTACCTGTTCTATTGGCAGTCATT
TCCTTCAGTAGTATCCTTTACTCTTATTTCAAGATAGTGTCCTCCATATGTTCTATCTCCTCAGTTCAAG
GGAAGTACACGGCATTTTCTACATGTGTCTCTCACCTTTCCATTGTCTTCTTATTTTATAGTACAGGCCT
TGGAGTGTATGTCAGTTCTGCTGTGGTCCAAAGCTCTCACTCTGCTGCAAGAGCCTCTGTGATGTATACT
GTGGTCACCCCGATGCTGAACCCCTTCATTTATAGTCTAAGGAATAAAGATGTGAAGAAAGCTCTGGAGA
GGCTATTAGAAGGAAAACTGTAA

Translation (310 aa):
MESGNSTRRIPSFFLLGFSENPHLQFLIFVLFLSMYLVTVLGNLLIIMVIITQSPLHTPMYFFLANLSFV
DICFTSTTVPKMLVNIQTQSKAITYADCISQMSVFLVFAELDNFLLAVMAYDRYVAICHPLYYTFIVNQH
LCILMVLLSWVVSILHAFLQSSIVLQLTFCGDVKIPHFFCELNQLSQLTCLDSLSSHLIMNLVPVLLAVI
SFSSILYSYFKIVSSICSISSVQGKYTAFSTCVSHLSIVFLFYSTGLGVYVSSAVVQSSHSAARASVMYT
VVTPMLNPFIYSLRNKDVKKALERLLEGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH